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jmjd4 jumonji domain containing 4 [ Clupea harengus (Atlantic herring) ]

Gene ID: 105900520, updated on 13-Mar-2024

Summary

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Gene symbol
jmjd4
Gene description
jumonji domain containing 4
See related
EnsemblRapid:ENSCHAG00020006016
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 25
Exon count:
6
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 25 NC_045176.1 (10338925..10341310)

Chromosome 25 - NC_045176.1Genomic Context describing neighboring genes Neighboring gene wingless-type MMTV integration site family, member 9A Neighboring gene synaptosome associated protein 47 Neighboring gene iron-sulfur cluster assembly factor IBA57 Neighboring gene gap junction protein gamma 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045176.1 Chromosome 25 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H4R3 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of translational termination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
2-oxoglutarate and iron-dependent oxygenase JMJD4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045176.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    10338925..10341310
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012827839.3 → XP_012683293.1  2-oxoglutarate and iron-dependent oxygenase JMJD4

    UniProtKB/TrEMBL
    A0A6P3VWP2
    Related
    ENSCHAP00020012293.1, ENSCHAT00020013190.1
    Conserved Domains (1) summary
    cl21464
    Location:38 → 280
    cupin_like; Conserved domain found in cupin and related proteins
Nucleotide Protein
Heading Accession and Version

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