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tent4b terminal nucleotidyltransferase 4B [ Clupea harengus (Atlantic herring) ]

Gene ID: 105899778, updated on 13-Mar-2024

Summary

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Gene symbol
tent4b
Gene description
terminal nucleotidyltransferase 4B
See related
EnsemblRapid:ENSCHAG00020021727
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Also known as
papd5
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 6
Exon count:
12
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 6 NC_045157.1 (15362827..15390936)

Chromosome 6 - NC_045157.1Genomic Context describing neighboring genes Neighboring gene myocyte enhancer factor 2ab Neighboring gene leucine rich repeat containing 28 Neighboring gene adenylate cyclase 7 Neighboring gene bromodomain containing 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045157.1 Chromosome 6 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(A) RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of TRAMP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
terminal nucleotidyltransferase 4B
Names
poly(A) RNA polymerase D5, non-canonical

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045157.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    15362827..15390936
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012826990.3 → XP_012682444.1  terminal nucleotidyltransferase 4B

    UniProtKB/TrEMBL
    A0A6P3VVY8
    Related
    ENSCHAP00020049857.1, ENSCHAT00020053343.1
    Conserved Domains (1) summary
    COG5260
    Location:183 → 463
    TRF4; DNA polymerase sigma [Replication, recombination and repair]
Nucleotide Protein
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