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LOC105898758 cysteine protease ATG4D [ Clupea harengus (Atlantic herring) ]

Gene ID: 105898758, updated on 7-Dec-2023

Summary

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Gene symbol
LOC105898758
Gene description
cysteine protease ATG4D
See related
EnsemblRapid:ENSCHAG00020018576
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Also known as
atg4d
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Genomic context

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See LOC105898758 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 1 NC_045152.1 (24567508..24576374)

Chromosome 1 - NC_045152.1Genomic Context describing neighboring genes Neighboring gene JunB proto-oncogene, AP-1 transcription factor subunit b Neighboring gene retbindin Neighboring gene microtubule associated serine/threonine kinase 1b Neighboring gene galactosylceramide sulfotransferase Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a Neighboring gene low density lipoprotein receptor a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045152.1 Chromosome 1 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-phosphatidylethanolamide deconjugating activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cysteine protease ATG4D
Names
autophagy related 4D cysteine peptidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045152.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    24567508..24576374
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031572824.1 → XP_031428684.1  cysteine protease ATG4D

    UniProtKB/TrEMBL
    A0A6P8FQN3
    Conserved Domains (1) summary
    pfam03416
    Location:89 → 403
    Peptidase_C54; Peptidase family C54

  2. XM_012825815.2 → XP_012681269.1  cysteine protease ATG4D

    UniProtKB/TrEMBL
    A0A6P8FQN3
    Related
    ENSCHAP00020042064.1, ENSCHAT00020045208.1
    Conserved Domains (1) summary
    pfam03416
    Location:89 → 403
    Peptidase_C54; Peptidase family C54
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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