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arhgap12b Rho GTPase activating protein 12b [ Clupea harengus (Atlantic herring) ]

Gene ID: 105897243, updated on 13-Mar-2024

Summary

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Gene symbol
arhgap12b
Gene description
Rho GTPase activating protein 12b
See related
EnsemblRapid:ENSCHAG00020012274
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Also known as
arhgap12
Orthologs
human zebrafish all
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Genomic context

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See arhgap12b in Genome Data Viewer
Location:
chromosome: 17
Exon count:
19
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 17 NC_045168.1 (19318016..19360230, complement)

Chromosome 17 - NC_045168.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 438 Neighboring gene zinc finger E-box binding homeobox 1b Neighboring gene kinesin-1 heavy chain Neighboring gene enhancer of polycomb homolog 1 (Drosophila) a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045168.1 Chromosome 17 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rho GTPase-activating protein 12b
Names
Rho GTPase activating protein 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045168.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    19318016..19360230 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031584376.2 → XP_031440236.1  rho GTPase-activating protein 12b isoform X2

    UniProtKB/TrEMBL
    A0A6P8GR05
    Related
    ENSCHAP00020027709.1, ENSCHAT00020029843.1
    Conserved Domains (5) summary
    cd12070
    Location:8 → 67
    SH3_ARHGAP12; Src Homology 3 domain of Rho GTPase-activating protein 12
    cd04403
    Location:653 → 839
    RhoGAP_ARHGAP27_15_12_9; GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are ...
    cd13233
    Location:464 → 576
    PH_ARHGAP9-like; Beta-spectrin pleckstrin homology (PH) domain
    pfam00397
    Location:258 → 284
    WW; WW domain
    pfam16618
    Location:65 → 254
    SH3-WW_linker; Linker region between SH3 and WW domains on ARHGAP12

  2. XM_031584375.2 → XP_031440235.1  rho GTPase-activating protein 12b isoform X1

    UniProtKB/TrEMBL
    A0A6P8GZK8
    Related
    ENSCHAP00020027701.1, ENSCHAT00020029835.1
    Conserved Domains (5) summary
    cd12070
    Location:8 → 67
    SH3_ARHGAP12; Src Homology 3 domain of Rho GTPase-activating protein 12
    cd04403
    Location:632 → 818
    RhoGAP_ARHGAP27_15_12_9; GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are ...
    cd13233
    Location:443 → 555
    PH_ARHGAP9-like; Beta-spectrin pleckstrin homology (PH) domain
    pfam00397
    Location:258 → 284
    WW; WW domain
    pfam16618
    Location:65 → 254
    SH3-WW_linker; Linker region between SH3 and WW domains on ARHGAP12
Nucleotide Protein
Heading Accession and Version

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