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atp2a1l ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1, like [ Clupea harengus (Atlantic herring) ]

Gene ID: 105894035, updated on 7-Dec-2023

Summary

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Gene symbol
atp2a1l
Gene description
ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1, like
See related
EnsemblRapid:ENSCHAG00020008750
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
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Genomic context

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Location:
chromosome: 23
Exon count:
25
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 23 NC_045174.1 (21353749..21371486, complement)

Chromosome 23 - NC_045174.1Genomic Context describing neighboring genes Neighboring gene sulfotransferase family 1, cytosolic sulfotransferase 6 Neighboring gene uncharacterized LOC122128707 Neighboring gene serine/threonine-protein phosphatase alpha-2 isoform-like Neighboring gene pelota mRNA surveillance and ribosome rescue factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045174.1 Chromosome 23 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables P-type calcium transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sarcoplasmic/endoplasmic reticulum calcium ATPase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045174.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    21353749..21371486 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012820509.3 → XP_012675963.1  sarcoplasmic/endoplasmic reticulum calcium ATPase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P3VMU0
    Related
    ENSCHAP00020019079.1, ENSCHAT00020020325.1
    Conserved Domains (1) summary
    cd02083
    Location:5 → 986
    P-type_ATPase_SERCA; sarco/endoplasmic reticulum Ca(2+)-ATPase (SERCA), similar to mammalian ATP2A1-3/SERCA1-3

  2. XM_012820510.3 → XP_012675964.1  sarcoplasmic/endoplasmic reticulum calcium ATPase 1 isoform X2

    UniProtKB/TrEMBL
    A0A6P3VMI6
    Conserved Domains (1) summary
    cd02083
    Location:6 → 951
    P-type_ATPase_SERCA; sarco/endoplasmic reticulum Ca(2+)-ATPase (SERCA), similar to mammalian ATP2A1-3/SERCA1-3
Nucleotide Protein
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