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txnl4b thioredoxin-like 4B [ Clupea harengus (Atlantic herring) ]

Gene ID: 105893307, updated on 13-Mar-2024

Summary

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Gene symbol
txnl4b
Gene description
thioredoxin-like 4B
See related
EnsemblRapid:ENSCHAG00020015147
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 21
Exon count:
3
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 21 NC_045172.1 (3863795..3864941, complement)

Chromosome 21 - NC_045172.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L16 Neighboring gene uncharacterized LOC105893311 Neighboring gene tRNA methyltransferase 10C, mitochondrial RNase P subunit Neighboring gene basic leucine zipper nuclear factor 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045172.1 Chromosome 21 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U5 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
thioredoxin-like protein 4B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045172.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    3863795..3864941 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012819700.3 → XP_012675154.1  thioredoxin-like protein 4B

    UniProtKB/TrEMBL
    A0A6P3VLZ2
    Related
    ENSCHAP00020033989.1, ENSCHAT00020036354.1
    Conserved Domains (1) summary
    cd02986
    Location:10 → 123
    DLP; Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to ...
Nucleotide Protein
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