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LOC105891399 BRCA1 DNA repair associated [ Clupea harengus (Atlantic herring) ]

Gene ID: 105891399, updated on 25-Jan-2024

Summary

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Gene symbol
LOC105891399
Gene description
BRCA1 DNA repair associated
See related
EnsemblRapid:ENSCHAG00020005587
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Also known as
brca1
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Genomic context

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Location:
chromosome: 1
Exon count:
21
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 1 NC_045152.1 (17223665..17250812)

Chromosome 1 - NC_045152.1Genomic Context describing neighboring genes Neighboring gene tumor necrosis factor receptor superfamily member 13B Neighboring gene ubiquitin specific peptidase 22 Neighboring gene rho-related GTP-binding protein RhoN-like Neighboring gene probable phosphatase phospho1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045152.1 Chromosome 1 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of BRCA1-A complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of BRCA1-BARD1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein piccolo

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045152.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    17223665..17250812
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031569040.1 → XP_031424900.1  protein piccolo isoform X1

    UniProtKB/TrEMBL
    A0A6P8FNB3
    Conserved Domains (4) summary
    PHA03247
    Location:1240 → 1643
    PHA03247; large tegument protein UL36; Provisional
    TIGR00599
    Location:27 → 175
    rad18; DNA repair protein rad18
    cd16498
    Location:23 → 71
    RING-HC_BRCA1; RING finger, HC subclass, found in breast cancer type 1 susceptibility protein (BRCA1) and similar proteins
    cl00038
    Location:1857 → 1953
    BRCT; C-terminal domain of the breast cancer suppressor protein (BRCA1) and related domains

  2. XM_031569053.1 → XP_031424913.1  protein piccolo isoform X3

    UniProtKB/TrEMBL
    A0A6P8F8R1
    Conserved Domains (4) summary
    PHA03247
    Location:1216 → 1619
    PHA03247; large tegument protein UL36; Provisional
    TIGR00599
    Location:27 → 175
    rad18; DNA repair protein rad18
    cd16498
    Location:23 → 71
    RING-HC_BRCA1; RING finger, HC subclass, found in breast cancer type 1 susceptibility protein (BRCA1) and similar proteins
    cl00038
    Location:1833 → 1929
    BRCT; C-terminal domain of the breast cancer suppressor protein (BRCA1) and related domains

  3. XM_031569048.1 → XP_031424908.1  protein piccolo isoform X2

    UniProtKB/TrEMBL
    A0A6P8F8Q6
    Related
    ENSCHAP00020011266.1, ENSCHAT00020012129.1
    Conserved Domains (4) summary
    PHA03247
    Location:1233 → 1636
    PHA03247; large tegument protein UL36; Provisional
    TIGR00599
    Location:20 → 168
    rad18; DNA repair protein rad18
    cd16498
    Location:16 → 64
    RING-HC_BRCA1; RING finger, HC subclass, found in breast cancer type 1 susceptibility protein (BRCA1) and similar proteins
    cl00038
    Location:1850 → 1946
    BRCT; C-terminal domain of the breast cancer suppressor protein (BRCA1) and related domains

  4. XM_031569061.2 → XP_031424921.1  protein piccolo isoform X4

    UniProtKB/TrEMBL
    A0A6P8FMS8
    Conserved Domains (4) summary
    PHA03247
    Location:1205 → 1608
    PHA03247; large tegument protein UL36; Provisional
    TIGR00599
    Location:4 → 140
    rad18; DNA repair protein rad18
    cl00038
    Location:1822 → 1918
    BRCT; C-terminal domain of the breast cancer suppressor protein (BRCA1) and related domains
    cl17238
    Location:1 → 36
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein
Heading Accession and Version

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