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pdx1 pancreatic and duodenal homeobox 1 [ Clupea harengus (Atlantic herring) ]

Gene ID: 105890121, updated on 13-Mar-2024

Summary

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Gene symbol
pdx1
Gene description
pancreatic and duodenal homeobox 1
See related
EnsemblRapid:ENSCHAG00020028544
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 17
Exon count:
2
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 17 NC_045168.1 (3603065..3605891, complement)

Chromosome 17 - NC_045168.1Genomic Context describing neighboring genes Neighboring gene WASP family member 3b Neighboring gene G protein-coupled receptor 12 Neighboring gene uncharacterized LOC105890178 Neighboring gene ligand of numb-protein X 2a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045168.1 Chromosome 17 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in type B pancreatic cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pancreas/duodenum homeobox protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045168.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    3603065..3605891 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012816093.2 → XP_012671547.2  pancreas/duodenum homeobox protein 1

    UniProtKB/TrEMBL
    A0A6P3VHE4
    Related
    ENSCHAP00020064626.1, ENSCHAT00020070304.1
    Conserved Domains (1) summary
    pfam00046
    Location:156 → 210
    Homeobox; Homeobox domain
Nucleotide Protein
Heading Accession and Version

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