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TRIM9 tripartite motif containing 9 [ Microcebus murinus (gray mouse lemur) ]

Gene ID: 105867673, updated on 13-Mar-2024

Summary

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Gene symbol
TRIM9
Gene description
tripartite motif containing 9
See related
Ensembl:ENSMICG00000013634
Gene type
protein coding
RefSeq status
MODEL
Organism
Microcebus murinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Cheirogaleidae; Microcebus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Mmur_3.0 (GCF_000165445.2) 3 NC_033662.1 (58778561..58903764, complement)
100 previous assembly Mmur_2.0 (GCF_000165445.1) Unplaced Scaffold NW_012204129.1 (4460942..4586724)

Chromosome 3 - NC_033662.1Genomic Context describing neighboring genes Neighboring gene abhydrolase domain containing 12B Neighboring gene glycogen phosphorylase L Neighboring gene uncharacterized LOC105867705 Neighboring gene thioredoxin related transmembrane protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase TRIM9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microcebus murinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmur_3.0 Primary Assembly

Genomic

  1. NC_033662.1 Reference Mmur_3.0 Primary Assembly

    Range
    58778561..58903764 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012757955.2 → XP_012613409.1  E3 ubiquitin-protein ligase TRIM9 isoform X3

    UniProtKB/TrEMBL
    A0A8B7FVQ3, A0A8C5V5J5
    Related
    ENSMICP00000025279.1, ENSMICT00000054473.2
    Conserved Domains (5) summary
    smart00502
    Location:273 → 399
    BBC; B-Box C-terminal domain
    smart00336
    Location:224 → 266
    BBOX; B-Box-type zinc finger
    cd00063
    Location:453 → 532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00162
    Location:9 → 38
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    cd12889
    Location:529 → 700
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67

  2. XM_020285823.1 → XP_020141412.1  E3 ubiquitin-protein ligase TRIM9 isoform X2

    UniProtKB/TrEMBL
    A0A8B7X142, A0A8C5XLT0
    Conserved Domains (5) summary
    smart00502
    Location:273 → 399
    BBC; B-Box C-terminal domain
    smart00336
    Location:224 → 266
    BBOX; B-Box-type zinc finger
    cd00063
    Location:453 → 532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:529 → 648
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cl17238
    Location:5 → 52
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  3. XM_020285822.1 → XP_020141411.1  E3 ubiquitin-protein ligase TRIM9 isoform X1

    UniProtKB/TrEMBL
    A0A8B7X115, A0A8C5XLT0
    Related
    ENSMICP00000035381.2, ENSMICT00000030898.2
    Conserved Domains (5) summary
    smart00502
    Location:273 → 399
    BBC; B-Box C-terminal domain
    smart00336
    Location:224 → 266
    BBOX; B-Box-type zinc finger
    cd00063
    Location:453 → 532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:596 → 711
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cl17238
    Location:5 → 52
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

RNA

  1. XR_001152373.2 RNA Sequence

  2. XR_001152374.2 RNA Sequence

    Related
    ENSMICT00000065353.1
Nucleotide Protein
Heading Accession and Version

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