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PCIF1 phosphorylated CTD interacting factor 1 [ Microcebus murinus (gray mouse lemur) ]

Gene ID: 105859249, updated on 13-Mar-2024

Summary

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Gene symbol
PCIF1
Gene description
phosphorylated CTD interacting factor 1
See related
Ensembl:ENSMICG00000011290
Gene type
protein coding
RefSeq status
MODEL
Organism
Microcebus murinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Cheirogaleidae; Microcebus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 18
Exon count:
17
Annotation release Status Assembly Chr Location
101 current Mmur_3.0 (GCF_000165445.2) 18 NC_033677.1 (39848728..39862345)
100 previous assembly Mmur_2.0 (GCF_000165445.1) Unplaced Scaffold NW_012200330.1 (2022055..2036703, complement)

Chromosome 18 - NC_033677.1Genomic Context describing neighboring genes Neighboring gene neuralized E3 ubiquitin protein ligase 2 Neighboring gene cathepsin A Neighboring gene phospholipid transfer protein Neighboring gene uncharacterized LOC105859250 Neighboring gene zinc finger protein 335 Neighboring gene matrix metallopeptidase 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II C-terminal domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphorylated CTD-interacting factor 1
Names
PDX1 C-terminal inhibiting factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microcebus murinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmur_3.0 Primary Assembly

Genomic

  1. NC_033677.1 Reference Mmur_3.0 Primary Assembly

    Range
    39848728..39862345
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012742902.2 → XP_012598356.1  phosphorylated CTD-interacting factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A8B7ET57
    Related
    ENSMICP00000010285.3, ENSMICT00000011295.3
    Conserved Domains (2) summary
    cd00201
    Location:47 → 77
    WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
    pfam12237
    Location:453 → 616
    PCIF1_WW; Phosphorylated CTD interacting factor 1 WW domain

  2. XM_012742901.2 → XP_012598355.1  phosphorylated CTD-interacting factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A8B7ET59
    Conserved Domains (2) summary
    cd00201
    Location:83 → 113
    WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
    pfam12237
    Location:489 → 652
    PCIF1_WW; Phosphorylated CTD interacting factor 1 WW domain
Nucleotide Protein
Heading Accession and Version

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