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PAX5 paired box 5 [ Propithecus coquereli (Coquerel's sifaka) ]

Gene ID: 105819760, updated on 13-Mar-2024

Summary

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Gene symbol
PAX5
Gene description
paired box 5
See related
Ensembl:ENSPCOG00000022547
Gene type
protein coding
RefSeq status
MODEL
Organism
Propithecus coquereli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Indriidae; Propithecus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Pcoq_1.0 (GCF_000956105.1) Unplaced Scaffold NW_012135414.1 (1147151..1324815)

NW_012135414.1Genomic Context describing neighboring genes Neighboring gene glyoxylate and hydroxypyruvate reductase Neighboring gene zinc finger CCHC-type containing 7 Neighboring gene transmembrane emp24 domain-containing protein 4 pseudogene Neighboring gene maternal embryonic leucine zipper kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012135414.1 Unplaced Scaffold Reference Pcoq_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
paired box protein Pax-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Propithecus coquereli Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pcoq_1.0 Primary Assembly

Genomic

  1. NW_012135414.1 Reference Pcoq_1.0 Primary Assembly

    Range
    1147151..1324815
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012656063.1 → XP_012511517.1  paired box protein Pax-5 isoform X1

    See identical proteins and their annotated locations for XP_012511517.1

    UniProtKB/TrEMBL
    A0A2K6G4G8
    Related
    ENSPCOP00000021108.1, ENSPCOT00000031767.1
    Conserved Domains (2) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain
    pfam12403
    Location:279 → 389
    Pax2_C; Paired-box protein 2 C terminal

  2. XM_012656072.1 → XP_012511526.1  paired box protein Pax-5 isoform X2

    UniProtKB/TrEMBL
    A0A2K6G4D2
    Related
    ENSPCOP00000021110.1, ENSPCOT00000031769.1
    Conserved Domains (2) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain
    pfam12403
    Location:279 → 341
    Pax2_C; Paired-box protein 2 C terminal

  3. XM_012656081.1 → XP_012511535.1  paired box protein Pax-5 isoform X3

    UniProtKB/TrEMBL
    A0A2K6G4G0
    Related
    ENSPCOP00000021111.1, ENSPCOT00000031770.1
    Conserved Domains (2) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain
    pfam12403
    Location:279 → 355
    Pax2_C; Paired-box protein 2 C terminal

  4. XM_012656107.1 → XP_012511561.1  paired box protein Pax-5 isoform X6

    UniProtKB/TrEMBL
    A0A2K6G4E1
    Related
    ENSPCOP00000021115.1, ENSPCOT00000031774.1
    Conserved Domains (1) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain

  5. XM_012656119.1 → XP_012511573.1  paired box protein Pax-5 isoform X8

    UniProtKB/TrEMBL
    A0A2K6G4G4
    Related
    ENSPCOP00000021116.1, ENSPCOT00000031775.1
    Conserved Domains (1) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain

  6. XM_012656098.1 → XP_012511552.1  paired box protein Pax-5 isoform X5

    See identical proteins and their annotated locations for XP_012511552.1

    UniProtKB/TrEMBL
    A0A2K6G4H2
    Related
    ENSPCOP00000021113.1, ENSPCOT00000031772.1
    Conserved Domains (1) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain

  7. XM_012656089.1 → XP_012511543.1  paired box protein Pax-5 isoform X4

    See identical proteins and their annotated locations for XP_012511543.1

    UniProtKB/TrEMBL
    A0A2K6G4F0
    Related
    ENSPCOP00000021112.1, ENSPCOT00000031771.1
    Conserved Domains (2) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain
    pfam12403
    Location:242 → 346
    Pax2_C; Paired-box protein 2 C terminal

  8. XM_012656113.1 → XP_012511567.1  paired box protein Pax-5 isoform X7

    See identical proteins and their annotated locations for XP_012511567.1

    Conserved Domains (2) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain
    pfam12403
    Location:236 → 298
    Pax2_C; Paired-box protein 2 C terminal

  9. XM_012656126.1 → XP_012511580.1  paired box protein Pax-5 isoform X9

    See identical proteins and their annotated locations for XP_012511580.1

    UniProtKB/TrEMBL
    A0A2K6G4H5
    Related
    ENSPCOP00000021118.1, ENSPCOT00000031777.1
    Conserved Domains (2) summary
    pfam12403
    Location:219 → 289
    Pax2_C; Paired-box protein 2 C terminal
    cl21459
    Location:16 → 80
    HTH; Helix-turn-helix domains
Nucleotide Protein
Heading Accession and Version

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