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DHX16 DEAH-box helicase 16 [ Propithecus coquereli (Coquerel's sifaka) ]

Gene ID: 105817274, updated on 13-Mar-2024

Summary

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Gene symbol
DHX16
Gene description
DEAH-box helicase 16
See related
Ensembl:ENSPCOG00000013298
Gene type
protein coding
RefSeq status
MODEL
Organism
Propithecus coquereli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Indriidae; Propithecus
Orthologs
human mouse all
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Genomic context

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See DHX16 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current Pcoq_1.0 (GCF_000956105.1) Unplaced Scaffold NW_012149775.1 (629989..644670)

NW_012149775.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1 regulatory subunit 18 Neighboring gene nurim Neighboring gene chromosome unknown open reading frame, human C6orf136 Neighboring gene alpha tubulin acetyltransferase 1 Neighboring gene mitochondrial ribosomal protein S18B Neighboring gene protein phosphatase 1 regulatory subunit 10

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012149775.1 Unplaced Scaffold Reference Pcoq_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Propithecus coquereli Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pcoq_1.0 Primary Assembly

Genomic

  1. NW_012149775.1 Reference Pcoq_1.0 Primary Assembly

    Range
    629989..644670
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012652911.1 → XP_012508365.1  putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16

    UniProtKB/TrEMBL
    A0A2K6ETC7
    Related
    ENSPCOP00000004989.1, ENSPCOT00000015321.1
    Conserved Domains (5) summary
    smart00487
    Location:402 → 584
    DEXDc; DEAD-like helicases superfamily
    smart00847
    Location:801 → 885
    HA2; Helicase associated domain (HA2) Add an annotation
    cd00046
    Location:419 → 558
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00079
    Location:583 → 740
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    pfam07717
    Location:920 → 1018
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
Nucleotide Protein
Heading Accession and Version

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