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LDLR low density lipoprotein receptor [ Propithecus coquereli (Coquerel's sifaka) ]

Gene ID: 105807852, updated on 13-Mar-2024

Summary

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Gene symbol
LDLR
Gene description
low density lipoprotein receptor
See related
Ensembl:ENSPCOG00000027747
Gene type
protein coding
RefSeq status
MODEL
Organism
Propithecus coquereli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Indriidae; Propithecus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current Pcoq_1.0 (GCF_000956105.1) Unplaced Scaffold NW_012140969.1 (2287949..2315076)

NW_012140969.1Genomic Context describing neighboring genes Neighboring gene translocase of inner mitochondrial membrane 29 Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 Neighboring gene SPC24 component of NDC80 kinetochore complex Neighboring gene KN motif and ankyrin repeat domains 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012140969.1 Unplaced Scaffold Reference Pcoq_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
low-density lipoprotein receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Propithecus coquereli Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pcoq_1.0 Primary Assembly

Genomic

  1. NW_012140969.1 Reference Pcoq_1.0 Primary Assembly

    Range
    2287949..2315076
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012641348.1 → XP_012496802.1  low-density lipoprotein receptor

    UniProtKB/TrEMBL
    A0A2K6GV24
    Related
    ENSPCOP00000030085.1, ENSPCOT00000041031.1
    Conserved Domains (7) summary
    smart00135
    Location:597 → 639
    LY; Low-density lipoprotein-receptor YWTD domain
    smart00179
    Location:398 → 432
    EGF_CA; Calcium-binding EGF-like domain
    cd05819
    Location:520 → 558
    NHL; NHL repeat [structural motif]
    pfam00057
    Location:235 → 270
    Ldl_recept_a; Low-density lipoprotein receptor domain class A
    pfam00058
    Location:573 → 613
    Ldl_recept_b; Low-density lipoprotein receptor repeat class B
    pfam14670
    Location:362 → 396
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl18310
    Location:483 → 672
    NHL; NHL repeat unit of beta-propeller proteins
Nucleotide Protein
Heading Accession and Version

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