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LOC105799546 uncharacterized LOC105799546 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105799546, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105799546
Gene description
uncharacterized LOC105799546
Locus tag
B456_006G142400
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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Location:
chromosome: 9
Exon count:
3
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 9 NC_068573.1 (38880308..38885478, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 6 NC_026934.1 (40032401..40037710, complement)

Chromosome 9 - NC_068573.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105799544 Neighboring gene uncharacterized LOC105799545 Neighboring gene uncharacterized LOC128032509 Neighboring gene late embryogenesis abundant protein D-113 Neighboring gene VQ motif-containing protein 17-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC105799546

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068573.1 Reference ASM2569854v1 Primary Assembly

    Range
    38880308..38885478 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012630176.2 → XP_012485630.1  uncharacterized protein LOC105799546

    See identical proteins and their annotated locations for XP_012485630.1

    UniProtKB/TrEMBL
    A0A0D2Q9X5, A0A0D2RW91
    Conserved Domains (3) summary
    smart00297
    Location:299 → 404
    BROMO; bromo domain
    smart00717
    Location:10 → 67
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:12 → 65
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
Nucleotide Protein
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