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LOC105796819 protein ALWAYS EARLY 3 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105796819, updated on 11-Apr-2024

Summary

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Gene symbol
LOC105796819
Gene description
protein ALWAYS EARLY 3
Locus tag
B456_005G058900
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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Location:
chromosome: 3
Exon count:
20
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 3 NC_068567.1 (6138023..6148308)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 5 NC_026933.1 (6117789..6128040)

Chromosome 3 - NC_068567.1Genomic Context describing neighboring genes Neighboring gene ethylene-responsive transcription factor ERF086 Neighboring gene zinc finger CCCH domain-containing protein 58 Neighboring gene mitogen-activated protein kinase homolog NTF6-like Neighboring gene transcription termination factor MTERF6, chloroplastic/mitochondrial-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription repressor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein ALWAYS EARLY 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068567.1 Reference ASM2569854v1 Primary Assembly

    Range
    6138023..6148308
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012626641.2 → XP_012482095.1  protein ALWAYS EARLY 3 isoform X2

    UniProtKB/TrEMBL
    A0A0D2R9W0
    Conserved Domains (3) summary
    smart00717
    Location:48 → 82
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:48 → 82
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam06584
    Location:634 → 734
    DIRP; DIRP

  2. XM_012626640.2 → XP_012482094.1  protein ALWAYS EARLY 3 isoform X1

    See identical proteins and their annotated locations for XP_012482094.1

    UniProtKB/TrEMBL
    A0A0D2N8D5, A0A0D2R9W0
    Conserved Domains (4) summary
    smart00717
    Location:48 → 82
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:48 → 82
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam06584
    Location:636 → 736
    DIRP; DIRP
    pfam15487
    Location:474 → 571
    FAM220; FAM220 family
Nucleotide Protein
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