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LOC105767361 telomere repeat-binding factor 4 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105767361, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105767361
Gene description
telomere repeat-binding factor 4
Locus tag
B456_009G143000
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105767361 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 5 NC_068569.1 (10929719..10934007, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 9 NC_026937.1 (10833572..10837871, complement)

Chromosome 5 - NC_068569.1Genomic Context describing neighboring genes Neighboring gene eukaryotic initiation factor 4A-10 Neighboring gene small nucleolar RNA snoR98 Neighboring gene glycylpeptide N-tetradecanoyltransferase 1 Neighboring gene dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial Neighboring gene mitochondrial import inner membrane translocase subunit TIM23-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
telomere repeat-binding factor 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068569.1 Reference ASM2569854v1 Primary Assembly

    Range
    10929719..10934007 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012586868.2 → XP_012442322.1  telomere repeat-binding factor 4

    See identical proteins and their annotated locations for XP_012442322.1

    UniProtKB/TrEMBL
    A0A0D2QFU5
    Conserved Domains (3) summary
    smart00526
    Location:114 → 178
    H15; Domain in histone families 1 and 5
    smart00717
    Location:5 → 56
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd11660
    Location:6 → 56
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
Nucleotide Protein
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