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PPRC1 PPARG related coactivator 1 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 105749347, updated on 13-Mar-2024

Summary

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Gene symbol
PPRC1
Gene description
PPARG related coactivator 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
14
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 2 NC_045427.1 (558171806..558187121)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 1 Unlocalized Scaffold NW_003816476.1 (60458..69298, complement)

Chromosome 2 - NC_045427.1Genomic Context describing neighboring genes Neighboring gene HPS6 biogenesis of lysosomal organelles complex 2 subunit 3 Neighboring gene LIM domain binding 1 Neighboring gene uncharacterized LOC116421884 Neighboring gene nucleolar and coiled-body phosphoprotein 1 Neighboring gene ELOVL fatty acid elongase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peroxisome proliferator-activated receptor gamma coactivator-related protein 1
Names
peroxisome proliferator-activated receptor gamma, coactivator-related 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045427.1 Reference mSarHar1.11 Primary Assembly

    Range
    558171806..558187121
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031955744.1 → XP_031811604.1  peroxisome proliferator-activated receptor gamma coactivator-related protein 1 isoform X3

    Conserved Domains (3) summary
    PRK13042
    Location:943 → 1034
    PRK13042; superantigen-like protein SSL4; Reviewed
    PTZ00449
    Location:401 → 648
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    cd12624
    Location:1478 → 1568
    RRM_PRC; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator-related protein 1 (PRC) and similar proteins

  2. XM_031955742.1 → XP_031811602.1  peroxisome proliferator-activated receptor gamma coactivator-related protein 1 isoform X1

    Conserved Domains (3) summary
    PRK13042
    Location:943 → 1034
    PRK13042; superantigen-like protein SSL4; Reviewed
    PTZ00449
    Location:401 → 648
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    cd12624
    Location:1480 → 1570
    RRM_PRC; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator-related protein 1 (PRC) and similar proteins

  3. XM_031955743.1 → XP_031811603.1  peroxisome proliferator-activated receptor gamma coactivator-related protein 1 isoform X2

    Conserved Domains (3) summary
    PRK13042
    Location:942 → 1033
    PRK13042; superantigen-like protein SSL4; Reviewed
    PTZ00449
    Location:400 → 647
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    cd12624
    Location:1479 → 1569
    RRM_PRC; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator-related protein 1 (PRC) and similar proteins
Nucleotide Protein
Heading Accession and Version

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