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TRIM17 tripartite motif containing 17 [ Aotus nancymaae (Ma's night monkey) ]

Gene ID: 105731109, updated on 12-Apr-2024

Summary

Gene symbol
TRIM17
Gene description
tripartite motif containing 17
Gene type
protein coding
RefSeq status
MODEL
Organism
Aotus nancymaae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Aotidae; Aotus
Orthologs
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Genomic context

Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_04 current 86718_ANA_hifiasm-v0.15.2.pri (GCF_030222135.1) Unplaced Scaffold NW_026988445.1 (31096609..31124038)
101 previous assembly Anan_2.0 (GCF_000952055.2) Unplaced Scaffold NW_018508540.1 (99632..127053)

NW_026988445.1Genomic Context describing neighboring genes Neighboring gene H2B.U histone 2 Neighboring gene histone H2B type 3-B Neighboring gene histone H2A type 3 Neighboring gene uncharacterized LOC105731110 Neighboring gene H3.4 histone, cluster member Neighboring gene tripartite motif containing 11 Neighboring gene obscurin-like

Genomic regions, transcripts, and products

General protein information

Preferred Names
LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030222135.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference 86718_ANA_hifiasm-v0.15.2.pri Primary Assembly

Genomic

  1. NW_026988445.1 Reference 86718_ANA_hifiasm-v0.15.2.pri Primary Assembly

    Range
    31096609..31124038
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012472721.3XP_012328144.1  LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM17

    Conserved Domains (3) summary
    cd00021
    Location:97134
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    cd15812
    Location:293471
    SPRY_PRY_TRIM17; PRY/SPRY domain of tripartite motif-binding protein 17 (TRIM17), also known as testis RING finger protein (terf)
    cl17238
    Location:1665
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...