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CD1C CD1c molecule [ Cercocebus atys (sooty mangabey) ]

Gene ID: 105601222, updated on 13-Mar-2024

Summary

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Gene symbol
CD1C
Gene description
CD1c molecule
See related
Ensembl:ENSCATG00000023187
Gene type
protein coding
RefSeq status
MODEL
Organism
Cercocebus atys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Cercocebus
Orthologs
human all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Caty_1.0 (GCF_000955945.1) Unplaced Scaffold NW_012002766.1 (420429..425663)

NW_012002766.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S10 pseudogene Neighboring gene T-cell surface glycoprotein CD1a Neighboring gene T-cell surface glycoprotein CD1a-like Neighboring gene CD1b molecule

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012002766.1 Unplaced Scaffold Reference Caty_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endogenous lipid antigen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables exogenous lipid antigen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipopeptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in antigen processing and presentation, endogenous lipid antigen via MHC class Ib IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in antigen processing and presentation, exogenous lipid antigen via MHC class Ib IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of T cell mediated cytotoxicity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
T-cell surface glycoprotein CD1c

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cercocebus atys Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caty_1.0

Genomic

  1. NW_012002766.1 Reference Caty_1.0

    Range
    420429..425663
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012093253.1 → XP_011948643.1  T-cell surface glycoprotein CD1c isoform X1

    UniProtKB/TrEMBL
    A0A2K5L4H4
    Conserved Domains (2) summary
    cd07698
    Location:203 → 295
    IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
    cl08246
    Location:19 → 196
    MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2

  2. XM_012093254.1 → XP_011948644.1  T-cell surface glycoprotein CD1c isoform X2

    UniProtKB/TrEMBL
    A0A2K5L4G3, A0A2K5L4H4
    Related
    ENSCATP00000007832.1, ENSCATT00000026822.1
    Conserved Domains (2) summary
    cd07698
    Location:202 → 294
    IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
    cl08246
    Location:19 → 195
    MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
Nucleotide Protein
Heading Accession and Version

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