Display Settings:

Format

Send to:

Choose Destination
We are sorry, but NCBI web applications do not support your browser and may not function properly. More information

    SLC19A2 solute carrier family 19 (thiamine transporter), member 2 [ Homo sapiens (human) ]

    Gene ID: 10560, updated on 9-Jun-2013
    Official Symbol
    SLC19A2provided by HGNC
    Official Full Name
    solute carrier family 19 (thiamine transporter), member 2provided by HGNC
    Primary source
    HGNC:10938
    Locus tag
    RP1-206D15.4
    See related
    Ensembl:ENSG00000117479; HPRD:04897; MIM:603941; Vega:OTTHUMG00000035452
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TC1; THT1; TRMA; THMD1; THTR1
    Summary
    This gene encodes the thiamin transporter protein. Mutations in this gene cause thiamin-responsive megaloblastic anemia syndrome (TRMA), which is an autosomal recessive disorder characterized by diabetes mellitus, megaloblastic anemia and sensorineural deafness. [provided by RefSeq, Jul 2008]
    Location :
    1q23.3
    Sequence :
    Chromosome: 1; NC_000001.10 (169433147..169455208, complement)
    See SLC19A2 in Epigenomics, MapViewer

    Chromosome 1 - NC_000001.10Genomic Context describing neighboring genes Neighboring gene ATPase, Na+/K+ transporting, beta 1 polypeptide Neighboring gene NME/NM23 family member 7 Neighboring gene basic leucine zipper nuclear factor 1 Neighboring gene coiled-coil domain containing 181 Neighboring gene uncharacterized LOC100287813 Neighboring gene coagulation factor V (proaccelerin, labile factor)

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Megaloblastic anemia, thiamine-responsive, with diabetes mellitus and sensorineural deafness

    Summary from GeneReviews: Thiamine-Responsive Megaloblastic Anemia Syndrome Go to GeneReviews

    Disease Characteristics
    Thiamine-responsive megaloblastic anemia syndrome (TRMA) is characterized by megaloblastic anemia, sensorineural hearing loss, and diabetes mellitus. Onset of megaloblastic anemia is between infancy and adolescence. The anemia is corrected with pharmacologic doses of thiamine (vitamin B1) (25-75 mg/day compared to US RDA of 1.5 mg/day). However, the red cells remain macrocytic. The anemia can recur when thiamine is withdrawn. Progressive sensorineural hearing loss has generally been early and can be detected in toddlers; hearing loss is irreversible and may not be prevented by thiamine treatment. The diabetes mellitus is non-type I in nature, with age of onset from infancy to adolescence.
    Diagnosis Testing
    The diagnosis of TRMA requires the presence of the phenotypic triad of megaloblastic anemia, sensorineural hearing loss, and diabetes mellitus. Examination of the bone marrow reveals megaloblastic anemia with erythroblasts often containing iron-filled mitochondria (ringed sideroblasts). SLC19A2, which encodes the high-affinity thiamine transporter, is the only gene in which mutations are known to cause TRMA. All individuals with the diagnostic phenotypic triad evaluated by sequence analysis have identifiable mutations in SLC19A2.
    Genetic Counseling
    TRMA is inherited in an autosomal recessive manner. At conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Once an at-risk sib is known to be unaffected, the risk of his/her being a carrier is 2/3. Carrier testing for at-risk relatives and prenatal testing for pregnancies at increased risk are possible for families in which the disease-causing mutations have been identified.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:115811 BioGRID:118992 CERS2    BioGRID  PubMed Two-hybrid 
    BioGRID:115811 BioGRID:108309 ELAVL1    BioGRID  PubMed Affinity Capture-RNA 
    BioGRID:115811 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 
    • Metabolism, organism-specific biosystem (from REACTOME)
      Metabolism, organism-specific biosystemMetabolic processes in human cells generate energy through the oxidation of molecules consumed in the diet and mediate the synthesis of diverse essential molecules not taken in the diet as well as th...
    • Metabolism of vitamins and cofactors, organism-specific biosystem (from REACTOME)
      Metabolism of vitamins and cofactors, organism-specific biosystemVitamins are a diverse group of organic compounds, required in small amounts in the diet. They have distinct biochemical roles, often as coenzymes, and are either not synthesized or synthesized only ...
    • Metabolism of water-soluble vitamins and cofactors, organism-specific biosystem (from REACTOME)
      Metabolism of water-soluble vitamins and cofactors, organism-specific biosystemVitamins are a diverse group of organic compounds, required in small amounts in the diet. They have distinct biochemical roles, often as coenzymes, and are either not synthesized or synthesized only ...
    • Vitamin B1 (thiamin) metabolism, organism-specific biosystem (from REACTOME)
      Vitamin B1 (thiamin) metabolism, organism-specific biosystemVitamin B1 (thiamin) is found naturally in certain foodstuffs such as green peas, spinach, liver, bananas, whole grains and legumes. Human diseases associated with thiamin deficiency include beriberi...
    • Vitamin digestion and absorption, organism-specific biosystem (from KEGG)
      Vitamin digestion and absorption, organism-specific biosystemVitamins are a diverse and chemically unrelated group of organic substances that share a common feature of being essential for normal health and well-being. They catalyze numerous biochemical reactio...
    • Vitamin digestion and absorption, conserved biosystem (from KEGG)
      Vitamin digestion and absorption, conserved biosystemVitamins are a diverse and chemically unrelated group of organic substances that share a common feature of being essential for normal health and well-being. They catalyze numerous biochemical reactio...

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    folic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    folic acid transporter activity NAS
    Non-traceable Author Statement
    more info
    PubMed 
    reduced folate carrier activity IEA
    Inferred from Electronic Annotation
    more info
     
    thiamine transmembrane transporter activity TAS
    Traceable Author Statement
    more info
    PubMed 
    thiamine uptake transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    folic acid transport NAS
    Non-traceable Author Statement
    more info
    PubMed 
    small molecule metabolic process TAS
    Traceable Author Statement
    more info
     
    thiamine transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    thiamine transport NAS
    Non-traceable Author Statement
    more info
    PubMed 
    thiamine-containing compound metabolic process TAS
    Traceable Author Statement
    more info
     
    vitamin metabolic process TAS
    Traceable Author Statement
    more info
     
    water-soluble vitamin metabolic process TAS
    Traceable Author Statement
    more info
     
    Component Evidence Code Pubs
    integral to membrane NAS
    Non-traceable Author Statement
    more info
    PubMed 
    plasma membrane TAS
    Traceable Author Statement
    more info
     
    Preferred Names
    thiamine transporter 1
    Names
    thiamine transporter 1
    thTr-1
    solute carrier family 19 member 2
    high affinity thiamine transporter
    reduced folate carrier protein (RFC) like

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_008255.1 RefSeqGene

      Range
      5001..27062
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_006996.2NP_008927.1  thiamine transporter 1

      Status: REVIEWED

      Source sequence(s)
      AF153330, AJ237724, BU608154
      Consensus CDS
      CCDS1280.1
      UniProtKB/Swiss-Prot
      O60779
      Related
      ENSP00000236137, OTTHUMP00000033497, ENST00000236137, OTTHUMT00000086106
      Conserved Domains (1) summary
      pfam01770
      Location:28458
      Blast Score: 1391
      Folate_carrier; Reduced folate carrier

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000001.10 Reference GRCh37.p10 Primary Assembly

      Range
      169433147..169455208, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000133.1 Alternate HuRef

      Range
      140656190..140678233, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018912.1 Alternate CHM1_1.0

      Range
      175985517..176007577, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

      Supplemental Content

      Recent activity

      Your browsing activity is empty.

      Activity recording is turned off.

      Turn recording back on

      See more...