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ATXN3 ataxin 3 [ Cercocebus atys (sooty mangabey) ]

Gene ID: 105596582, updated on 13-Mar-2024

Summary

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Gene symbol
ATXN3
Gene description
ataxin 3
See related
Ensembl:ENSCATG00000037129
Gene type
protein coding
RefSeq status
MODEL
Organism
Cercocebus atys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Cercocebus
Orthologs
human mouse all
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Genomic context

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See ATXN3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current Caty_1.0 (GCF_000955945.1) Unplaced Scaffold NW_012001960.1 (10629977..10697544, complement)

NW_012001960.1Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis-trans isomerase A pseudogene Neighboring gene thyroid hormone receptor interactor 11 Neighboring gene NADH:ubiquinone oxidoreductase subunit B1 Neighboring gene cleavage and polyadenylation specific factor 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012001960.1 Unplaced Scaffold Reference Caty_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ataxin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cercocebus atys Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caty_1.0

Genomic

  1. NW_012001960.1 Reference Caty_1.0

    Range
    10629977..10697544 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012083709.1 → XP_011939099.1  ataxin-3 isoform X1

    UniProtKB/TrEMBL
    A0A2K5MRI1
    Conserved Domains (2) summary
    pfam02099
    Location:9 → 163
    Josephin; Josephin
    pfam16619
    Location:264 → 330
    SUIM_assoc; Unstructured region C-term to UIM in Ataxin3

  2. XM_012083712.1 → XP_011939102.1  ataxin-3 isoform X4

    Conserved Domains (2) summary
    pfam02099
    Location:9 → 112
    Josephin; Josephin
    pfam16619
    Location:213 → 279
    SUIM_assoc; Unstructured region C-term to UIM in Ataxin3

  3. XM_012083711.1 → XP_011939101.1  ataxin-3 isoform X3

    Conserved Domains (3) summary
    pfam02099
    Location:15 → 118
    Josephin; Josephin
    pfam02809
    Location:179 → 194
    UIM; Ubiquitin interaction motif
    pfam16619
    Location:219 → 285
    SUIM_assoc; Unstructured region C-term to UIM in Ataxin3

  4. XM_012083710.1 → XP_011939100.1  ataxin-3 isoform X2

    UniProtKB/TrEMBL
    A0A2K5MRI6, A0A2K5MRL3
    Related
    ENSCATP00000027834.1, ENSCATT00000052081.1
    Conserved Domains (2) summary
    pfam02099
    Location:11 → 163
    Josephin; Josephin
    pfam16619
    Location:264 → 330
    SUIM_assoc; Unstructured region C-term to UIM in Ataxin3

  5. XM_012083713.1 → XP_011939103.1  ataxin-3 isoform X5

    UniProtKB/TrEMBL
    A0A2K5MRI6, A0A2K5MRJ5
    Related
    ENSCATP00000027841.1, ENSCATT00000052088.1
    Conserved Domains (2) summary
    pfam02099
    Location:11 → 112
    Josephin; Josephin
    pfam16619
    Location:213 → 279
    SUIM_assoc; Unstructured region C-term to UIM in Ataxin3

  6. XM_012083717.1 → XP_011939107.1  ataxin-3 isoform X7

    Conserved Domains (2) summary
    pfam02099
    Location:10 → 65
    Josephin; Josephin
    pfam16619
    Location:166 → 232
    SUIM_assoc; Unstructured region C-term to UIM in Ataxin3

  7. XM_012083716.1 → XP_011939106.1  ataxin-3 isoform X6

    See identical proteins and their annotated locations for XP_011939106.1

    UniProtKB/TrEMBL
    A0A2K5MRI7, A0A2K5MRM8
    Related
    ENSCATP00000027849.1, ENSCATT00000052096.1
    Conserved Domains (2) summary
    pfam02099
    Location:9 → 163
    Josephin
    pfam16619
    Location:263 → 292
    SUIM_assoc; Unstructured region C-term to UIM in Ataxin3

  8. XM_012083714.1 → XP_011939104.1  ataxin-3 isoform X6

    See identical proteins and their annotated locations for XP_011939104.1

    UniProtKB/TrEMBL
    A0A2K5MRI7, A0A2K5MRM8
    Related
    ENSCATP00000027853.1, ENSCATT00000052100.1
    Conserved Domains (2) summary
    pfam02099
    Location:9 → 163
    Josephin
    pfam16619
    Location:263 → 292
    SUIM_assoc; Unstructured region C-term to UIM in Ataxin3

  9. XM_012083719.1 → XP_011939109.1  ataxin-3 isoform X9

    Conserved Domains (1) summary
    pfam02099
    Location:9 → 163
    Josephin

  10. XM_012083718.1 → XP_011939108.1  ataxin-3 isoform X8

    See identical proteins and their annotated locations for XP_011939108.1

    Conserved Domains (1) summary
    pfam02099
    Location:9 → 159
    Josephin

RNA

  1. XR_001018710.1 RNA Sequence

  2. XR_001018709.1 RNA Sequence

  3. XR_001018711.1 RNA Sequence

    Related
    ENSCATT00000052095.1
Nucleotide Protein
Heading Accession and Version

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