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IFT88 intraflagellar transport 88 [ Cercocebus atys (sooty mangabey) ]

Gene ID: 105591947, updated on 13-Mar-2024

Summary

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Gene symbol
IFT88
Gene description
intraflagellar transport 88
See related
Ensembl:ENSCATG00000032538
Gene type
protein coding
RefSeq status
MODEL
Organism
Cercocebus atys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Cercocebus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
100 current Caty_1.0 (GCF_000955945.1) Unplaced Scaffold NW_012001296.1 (3667411..3789367)

NW_012001296.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105591941 Neighboring gene crystallin lambda 1 Neighboring gene uncharacterized LOC105591949 Neighboring gene EEF1A lysine methyltransferase 1 Neighboring gene interleukin 17D Neighboring gene GTP-binding nuclear protein Ran-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012001296.1 Unplaced Scaffold Reference Caty_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables kinesin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in inner ear receptor cell stereocilium organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intraciliary transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in kidney development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in non-motile cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centriole IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ciliary basal body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ciliary base IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in non-motile cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
intraflagellar transport protein 88 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cercocebus atys Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caty_1.0

Genomic

  1. NW_012001296.1 Reference Caty_1.0

    Range
    3667411..3789367
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012073437.1 → XP_011928827.1  intraflagellar transport protein 88 homolog isoform X1

    See identical proteins and their annotated locations for XP_011928827.1

    UniProtKB/TrEMBL
    A0A2K5LWF3
    Related
    ENSCATP00000017282.1, ENSCATT00000041448.1
    Conserved Domains (7) summary
    COG0457
    Location:428 → 686
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:484 → 512
    TPR; TPR repeat [structural motif]
    cd15832
    Location:229 → 260
    SNAP; TPR repeat [structural motif]
    pfam00515
    Location:519 → 543
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:277 → 333
    TPR_11; TPR repeat
    pfam13424
    Location:235 → 304
    TPR_12; Tetratricopeptide repeat
    cl24038
    Location:229 → 330
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family

  2. XM_012073436.1 → XP_011928826.1  intraflagellar transport protein 88 homolog isoform X1

    See identical proteins and their annotated locations for XP_011928826.1

    UniProtKB/TrEMBL
    A0A2K5LWF3
    Conserved Domains (7) summary
    COG0457
    Location:428 → 686
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:484 → 512
    TPR; TPR repeat [structural motif]
    cd15832
    Location:229 → 260
    SNAP; TPR repeat [structural motif]
    pfam00515
    Location:519 → 543
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:277 → 333
    TPR_11; TPR repeat
    pfam13424
    Location:235 → 304
    TPR_12; Tetratricopeptide repeat
    cl24038
    Location:229 → 330
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family

  3. XM_012073440.1 → XP_011928830.1  intraflagellar transport protein 88 homolog isoform X3

    Conserved Domains (7) summary
    COG0457
    Location:428 → 686
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:484 → 512
    TPR; TPR repeat [structural motif]
    cd15832
    Location:229 → 260
    SNAP; TPR repeat [structural motif]
    pfam00515
    Location:519 → 543
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:277 → 333
    TPR_11; TPR repeat
    pfam13424
    Location:235 → 304
    TPR_12; Tetratricopeptide repeat
    cl24038
    Location:229 → 330
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family

  4. XM_012073439.1 → XP_011928829.1  intraflagellar transport protein 88 homolog isoform X2

    UniProtKB/TrEMBL
    A0A2K5LWF9
    Related
    ENSCATP00000017287.1, ENSCATT00000041453.1
    Conserved Domains (7) summary
    COG0457
    Location:409 → 667
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:465 → 493
    TPR; TPR repeat [structural motif]
    cd15832
    Location:210 → 241
    SNAP; TPR repeat [structural motif]
    pfam00515
    Location:500 → 524
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:258 → 314
    TPR_11; TPR repeat
    pfam13424
    Location:216 → 285
    TPR_12; Tetratricopeptide repeat
    cl24038
    Location:210 → 311
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family

  5. XM_012073438.1 → XP_011928828.1  intraflagellar transport protein 88 homolog isoform X1

    See identical proteins and their annotated locations for XP_011928828.1

    UniProtKB/TrEMBL
    A0A2K5LWF3
    Conserved Domains (7) summary
    COG0457
    Location:428 → 686
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:484 → 512
    TPR; TPR repeat [structural motif]
    cd15832
    Location:229 → 260
    SNAP; TPR repeat [structural motif]
    pfam00515
    Location:519 → 543
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:277 → 333
    TPR_11; TPR repeat
    pfam13424
    Location:235 → 304
    TPR_12; Tetratricopeptide repeat
    cl24038
    Location:229 → 330
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family

  6. XM_012073441.1 → XP_011928831.1  intraflagellar transport protein 88 homolog isoform X4

    See identical proteins and their annotated locations for XP_011928831.1

    Conserved Domains (6) summary
    sd00006
    Location:402 → 430
    TPR; TPR repeat [structural motif]
    cd15832
    Location:147 → 178
    SNAP; TPR repeat [structural motif]
    pfam00515
    Location:437 → 461
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:401 → 465
    TPR_11; TPR repeat
    pfam13424
    Location:153 → 222
    TPR_12; Tetratricopeptide repeat
    cl24038
    Location:147 → 248
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family

  7. XM_012073442.1 → XP_011928832.1  intraflagellar transport protein 88 homolog isoform X4

    See identical proteins and their annotated locations for XP_011928832.1

    Conserved Domains (6) summary
    sd00006
    Location:402 → 430
    TPR; TPR repeat [structural motif]
    cd15832
    Location:147 → 178
    SNAP; TPR repeat [structural motif]
    pfam00515
    Location:437 → 461
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:401 → 465
    TPR_11; TPR repeat
    pfam13424
    Location:153 → 222
    TPR_12; Tetratricopeptide repeat
    cl24038
    Location:147 → 248
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family
Nucleotide Protein
Heading Accession and Version

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