U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

VPS13B vacuolar protein sorting 13 homolog B [ Cercocebus atys (sooty mangabey) ]

Gene ID: 105586531, updated on 13-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
VPS13B
Gene description
vacuolar protein sorting 13 homolog B
See related
Ensembl:ENSCATG00000035674
Gene type
protein coding
RefSeq status
MODEL
Organism
Cercocebus atys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Cercocebus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
66
Annotation release Status Assembly Chr Location
100 current Caty_1.0 (GCF_000955945.1) Unplaced Scaffold NW_012010022.1 (7056331..7929522)

NW_012010022.1Genomic Context describing neighboring genes Neighboring gene proline-rich protein 36 Neighboring gene protein odd-skipped-related 2 Neighboring gene uncharacterized LOC105586580 Neighboring gene insulin-like growth factor 2 mRNA-binding protein 2 pseudogene Neighboring gene male-specific lethal 3 homolog pseudogene Neighboring gene LETM1 and EF-hand domain-containing protein 1, mitochondrial pseudogene Neighboring gene cytochrome c oxidase subunit 6C Neighboring gene EF-hand calcium-binding domain-containing protein 14 pseudogene Neighboring gene regulator of G protein signaling 22

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_012010022.1 Unplaced Scaffold Reference Caty_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

General protein information

Go to the top of the page Help
Preferred Names
vacuolar protein sorting-associated protein 13B

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Cercocebus atys Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caty_1.0

Genomic

  1. NW_012010022.1 Reference Caty_1.0

    Range
    7056331..7929522
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012061645.1 → XP_011917035.1  vacuolar protein sorting-associated protein 13B isoform X11

    UniProtKB/TrEMBL
    A0A2K5MGQ9
    Related
    ENSCATP00000024349.1, ENSCATT00000048573.1
    Conserved Domains (4) summary
    pfam06650
    Location:2597 → 2789
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3698 → 3802
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:2 → 84
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3550 → 3696
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  2. XM_012061644.1 → XP_011917034.1  vacuolar protein sorting-associated protein 13B isoform X10

    UniProtKB/TrEMBL
    A0A2K5MGM5
    Related
    ENSCATP00000024348.1, ENSCATT00000048572.1
    Conserved Domains (4) summary
    pfam06650
    Location:2622 → 2814
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3723 → 3827
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:2 → 84
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3575 → 3721
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  3. XM_012061634.1 → XP_011917024.1  vacuolar protein sorting-associated protein 13B isoform X2

    UniProtKB/TrEMBL
    A0A2K5MGM5
    Conserved Domains (3) summary
    pfam06650
    Location:2569 → 2761
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3670 → 3774
    ATG_C; Autophagy-related protein C terminal domain
    pfam16909
    Location:3522 → 3668
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  4. XM_012061633.1 → XP_011917023.1  vacuolar protein sorting-associated protein 13B isoform X1

    UniProtKB/TrEMBL
    A0A2K5MGM5
    Conserved Domains (3) summary
    pfam06650
    Location:2570 → 2762
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3671 → 3775
    ATG_C; Autophagy-related protein C terminal domain
    pfam16909
    Location:3523 → 3669
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  5. XM_012061635.1 → XP_011917025.1  vacuolar protein sorting-associated protein 13B isoform X3

    UniProtKB/TrEMBL
    A0A2K5MGM5
    Conserved Domains (3) summary
    pfam06650
    Location:2563 → 2755
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3664 → 3768
    ATG_C; Autophagy-related protein C terminal domain
    pfam16909
    Location:3516 → 3662
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  6. XM_012061637.1 → XP_011917027.1  vacuolar protein sorting-associated protein 13B isoform X5

    UniProtKB/TrEMBL
    A0A2K5MGM5
    Conserved Domains (3) summary
    pfam06650
    Location:2553 → 2745
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3654 → 3758
    ATG_C; Autophagy-related protein C terminal domain
    pfam16909
    Location:3506 → 3652
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  7. XM_012061639.1 → XP_011917029.1  vacuolar protein sorting-associated protein 13B isoform X6

    UniProtKB/TrEMBL
    A0A2K5MGQ9
    Conserved Domains (3) summary
    pfam06650
    Location:2545 → 2737
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3646 → 3750
    ATG_C; Autophagy-related protein C terminal domain
    pfam16909
    Location:3498 → 3644
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  8. XM_012061636.1 → XP_011917026.1  vacuolar protein sorting-associated protein 13B isoform X4

    UniProtKB/TrEMBL
    A0A2K5MGM5
    Conserved Domains (3) summary
    pfam06650
    Location:2554 → 2746
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3655 → 3759
    ATG_C; Autophagy-related protein C terminal domain
    pfam16909
    Location:3507 → 3653
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  9. XM_012061640.1 → XP_011917030.1  vacuolar protein sorting-associated protein 13B isoform X7

    See identical proteins and their annotated locations for XP_011917030.1

    UniProtKB/TrEMBL
    A0A2K5MGM5
    Conserved Domains (3) summary
    pfam06650
    Location:2532 → 2724
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3633 → 3737
    ATG_C; Autophagy-related protein C terminal domain
    pfam16909
    Location:3485 → 3631
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  10. XM_012061641.1 → XP_011917031.1  vacuolar protein sorting-associated protein 13B isoform X7

    See identical proteins and their annotated locations for XP_011917031.1

    UniProtKB/TrEMBL
    A0A2K5MGM5
    Conserved Domains (3) summary
    pfam06650
    Location:2532 → 2724
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3633 → 3737
    ATG_C; Autophagy-related protein C terminal domain
    pfam16909
    Location:3485 → 3631
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  11. XM_012061642.1 → XP_011917032.1  vacuolar protein sorting-associated protein 13B isoform X8

    UniProtKB/TrEMBL
    A0A2K5MGM5
    Conserved Domains (3) summary
    pfam06650
    Location:2250 → 2442
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3351 → 3455
    ATG_C; Autophagy-related protein C terminal domain
    pfam16909
    Location:3203 → 3349
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  12. XM_012061643.1 → XP_011917033.1  vacuolar protein sorting-associated protein 13B isoform X9

    UniProtKB/TrEMBL
    A0A2K5MGM5
    Conserved Domains (3) summary
    pfam06650
    Location:2002 → 2194
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3103 → 3207
    ATG_C; Autophagy-related protein C terminal domain
    pfam16909
    Location:2955 → 3101
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.