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SALL4 spalt like transcription factor 4 [ Cercocebus atys (sooty mangabey) ]

Gene ID: 105585372, updated on 13-Mar-2024

Summary

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Gene symbol
SALL4
Gene description
spalt like transcription factor 4
See related
Ensembl:ENSCATG00000030757
Gene type
protein coding
RefSeq status
MODEL
Organism
Cercocebus atys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Cercocebus
Orthologs
human mouse all
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Genomic context

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See SALL4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Caty_1.0 (GCF_000955945.1) Unplaced Scaffold NW_012009248.1 (8735000..8752444)

NW_012009248.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105585371 Neighboring gene endoplasmic reticulum resident protein 29 pseudogene Neighboring gene ZFP64 zinc finger protein Neighboring gene ATPase phospholipid transporting 9A (putative) Neighboring gene nuclear factor of activated T cells 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012009248.1 Unplaced Scaffold Reference Caty_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sal-like protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cercocebus atys Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caty_1.0

Genomic

  1. NW_012009248.1 Reference Caty_1.0

    Range
    8735000..8752444
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012058993.1 → XP_011914383.1  sal-like protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A2K5LJU0
    Related
    ENSCATP00000013229.1, ENSCATT00000037367.1
    Conserved Domains (5) summary
    cd11674
    Location:791 → 891
    lambda-1; inner capsid protein lambda-1 or VP3
    COG5048
    Location:382 → 663
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:568 → 588
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:626 → 648
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:580 → 605
    zf-H2C2_2; Zinc-finger double domain

  2. XM_012058994.1 → XP_011914384.1  sal-like protein 4 isoform X2

    Conserved Domains (5) summary
    cd11674
    Location:767 → 867
    lambda-1; inner capsid protein lambda-1 or VP3
    COG5048
    Location:358 → 639
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:544 → 564
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:602 → 624
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:556 → 581
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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