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TRIM55 tripartite motif containing 55 [ Cercocebus atys (sooty mangabey) ]

Gene ID: 105585216, updated on 13-Mar-2024

Summary

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Gene symbol
TRIM55
Gene description
tripartite motif containing 55
See related
Ensembl:ENSCATG00000002501
Gene type
protein coding
RefSeq status
MODEL
Organism
Cercocebus atys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Cercocebus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Caty_1.0 (GCF_000955945.1) Unplaced Scaffold NW_012009137.1 (5734266..5783487)

NW_012009137.1Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase subunit 5A, mitochondrial pseudogene Neighboring gene uncharacterized LOC105585215 Neighboring gene DnaJ heat shock protein family (Hsp40) member C5 beta Neighboring gene corticotropin releasing hormone Neighboring gene ribosome biogenesis regulator 1 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012009137.1 Unplaced Scaffold Reference Caty_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tripartite motif-containing protein 55

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cercocebus atys Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caty_1.0

Genomic

  1. NW_012009137.1 Reference Caty_1.0

    Range
    5734266..5783487
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012058642.1 → XP_011914032.1  tripartite motif-containing protein 55 isoform X2

    UniProtKB/TrEMBL
    A0A2K5KIP0, A0A2K5KIR2
    Related
    ENSCATP00000000564.1, ENSCATT00000003159.1
    Conserved Domains (3) summary
    cd00162
    Location:26 → 85
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    pfam00643
    Location:119 → 161
    zf-B_box; B-box zinc finger
    cl23765
    Location:168 → 294
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

  2. XM_012058641.1 → XP_011914031.1  tripartite motif-containing protein 55 isoform X1

    UniProtKB/TrEMBL
    A0A2K5KIR0, A0A2K5KIR2
    Related
    ENSCATP00000000578.1, ENSCATT00000003214.1
    Conserved Domains (3) summary
    cd00162
    Location:26 → 85
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    pfam00643
    Location:119 → 161
    zf-B_box; B-box zinc finger
    cl23765
    Location:168 → 294
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

  3. XM_012058645.1 → XP_011914035.1  tripartite motif-containing protein 55 isoform X5

    UniProtKB/TrEMBL
    A0A2K5KIN6, A0A2K5KIR2
    Related
    ENSCATP00000000557.1, ENSCATT00000003109.1
    Conserved Domains (3) summary
    cd00162
    Location:26 → 85
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    pfam00643
    Location:119 → 161
    zf-B_box; B-box zinc finger
    cl23765
    Location:168 → 294
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

  4. XM_012058644.1 → XP_011914034.1  tripartite motif-containing protein 55 isoform X4

    UniProtKB/TrEMBL
    A0A2K5KIR2
    Conserved Domains (2) summary
    cd00162
    Location:26 → 85
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    pfam00643
    Location:119 → 161
    zf-B_box; B-box zinc finger

  5. XM_012058643.1 → XP_011914033.1  tripartite motif-containing protein 55 isoform X3

    UniProtKB/TrEMBL
    A0A2K5KIR2
    Conserved Domains (2) summary
    pfam00643
    Location:50 → 92
    zf-B_box; B-box zinc finger
    cl23765
    Location:99 → 225
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits
Nucleotide Protein
Heading Accession and Version

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