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    MADE_1014910 ribose-5-phosphate isomerase A [ Alteromonas macleodii str. 'Deep ecotype' ]

    Gene ID: 10558334, updated on 18-May-2013
    Gene symbol
    MADE_1014910
    Gene description
    ribose-5-phosphate isomerase A
    Locus tag
    MADE_1014910
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Alteromonas macleodii str. 'Deep ecotype' (strain: Deep ecotype, old-name: Alteromonas macleodii 'Deep ecotype')
    Lineage
    Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alteromonas
    Sequence :
    NC_011138.2 (3251516..3252172)

    NC_011138.2Genomic Context describing neighboring genes Neighboring gene histidine kinase response regulator hybrid protein Neighboring gene 5-formyltetrahydrofolate cyclo-ligase Neighboring gene D-3-phosphoglycerate dehydrogenase Neighboring gene hypothetical protein

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter. Ivars-Martinez E, et al. ISME J, 2008 Dec. PMID 18670397.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Names
    ribose-5-phosphate isomerase A
    YP_004428114.1
    • COG0120 Ribose 5-phosphate isomerase

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_011138.2

      Range
      3251516..3252172
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_004428114.1 ribose-5-phosphate isomerase A [Alteromonas macleodii str. 'Deep ecotype']

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      F2GCW9
      Conserved Domains (1) summary
      cd01398
      Location:15 – 210
      Blast Score: 697
      RPI_A; RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the ...
    Nucleotide Protein
    Heading Accession and Version
    genomic CP001103.2 AEA99116.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • BioSystems
        BioSystems
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • Protein Clusters
        Related Protein Clusters
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

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