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EBF1 EBF transcription factor 1 [ Cercocebus atys (sooty mangabey) ]

Gene ID: 105581571, updated on 13-Mar-2024

Summary

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Gene symbol
EBF1
Gene description
EBF transcription factor 1
See related
Ensembl:ENSCATG00000041829
Gene type
protein coding
RefSeq status
MODEL
Organism
Cercocebus atys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Cercocebus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current Caty_1.0 (GCF_000955945.1) Unplaced Scaffold NW_012007035.1 (2438763..2843673, complement)

NW_012007035.1Genomic Context describing neighboring genes Neighboring gene hsp90 co-chaperone Cdc37 pseudogene Neighboring gene uracil-DNA glycosylase pseudogene Neighboring gene ring finger protein 145 Neighboring gene ubiquitin like domain containing CTD phosphatase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012007035.1 Unplaced Scaffold Reference Caty_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor COE1
Names
early B cell factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cercocebus atys Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caty_1.0

Genomic

  1. NW_012007035.1 Reference Caty_1.0

    Range
    2438763..2843673 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012050860.1 → XP_011906250.1  transcription factor COE1 isoform X8

    See identical proteins and their annotated locations for XP_011906250.1

    Related
    ENSCATP00000038276.1, ENSCATT00000062580.1
    Conserved Domains (3) summary
    cd01175
    Location:254 → 338
    IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
    pfam16422
    Location:21 → 247
    COE1_DBD; Transcription factor COE1 DNA-binding domain
    pfam16423
    Location:339 → 382
    COE1_HLH; Transcription factor COE1 helix-loop-helix domain

  2. XM_012050859.1 → XP_011906249.1  transcription factor COE1 isoform X7

    See identical proteins and their annotated locations for XP_011906249.1

    Conserved Domains (3) summary
    cd01175
    Location:255 → 339
    IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
    pfam16422
    Location:21 → 247
    COE1_DBD; Transcription factor COE1 DNA-binding domain
    pfam16423
    Location:340 → 383
    COE1_HLH; Transcription factor COE1 helix-loop-helix domain

  3. XM_012050858.1 → XP_011906248.1  transcription factor COE1 isoform X6

    See identical proteins and their annotated locations for XP_011906248.1

    UniProtKB/TrEMBL
    A0A2K5NL69
    Related
    ENSCATP00000038274.1, ENSCATT00000062578.1
    Conserved Domains (3) summary
    cd01175
    Location:262 → 346
    IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
    pfam16422
    Location:21 → 247
    COE1_DBD; Transcription factor COE1 DNA-binding domain
    pfam16423
    Location:347 → 390
    COE1_HLH; Transcription factor COE1 helix-loop-helix domain

  4. XM_012050857.1 → XP_011906247.1  transcription factor COE1 isoform X5

    See identical proteins and their annotated locations for XP_011906247.1

    Conserved Domains (3) summary
    cd01175
    Location:263 → 347
    IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
    pfam16422
    Location:21 → 247
    COE1_DBD; Transcription factor COE1 DNA-binding domain
    pfam16423
    Location:348 → 391
    COE1_HLH; Transcription factor COE1 helix-loop-helix domain

  5. XM_012050856.1 → XP_011906246.1  transcription factor COE1 isoform X4

    Conserved Domains (3) summary
    cd11606
    Location:77 → 283
    COE_DBD; Colier/Olf/Early B-cell factor (EBF) DNA Binding Domain
    cd01175
    Location:290 → 374
    IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
    pfam16423
    Location:375 → 418
    COE1_HLH; Transcription factor COE1 helix-loop-helix domain

  6. XM_012050855.1 → XP_011906245.1  transcription factor COE1 isoform X3

    Conserved Domains (3) summary
    cd11606
    Location:77 → 283
    COE_DBD; Colier/Olf/Early B-cell factor (EBF) DNA Binding Domain
    cd01175
    Location:299 → 383
    IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
    pfam16423
    Location:384 → 427
    COE1_HLH; Transcription factor COE1 helix-loop-helix domain

  7. XM_012050854.1 → XP_011906244.1  transcription factor COE1 isoform X2

    Conserved Domains (3) summary
    cd11606
    Location:77 → 283
    COE_DBD; Colier/Olf/Early B-cell factor (EBF) DNA Binding Domain
    cd01175
    Location:299 → 383
    IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
    pfam16423
    Location:384 → 427
    COE1_HLH; Transcription factor COE1 helix-loop-helix domain

  8. XM_012050852.1 → XP_011906242.1  transcription factor COE1 isoform X1

    See identical proteins and their annotated locations for XP_011906242.1

    Conserved Domains (3) summary
    cd11606
    Location:77 → 283
    COE_DBD; Colier/Olf/Early B-cell factor (EBF) DNA Binding Domain
    cd01175
    Location:299 → 383
    IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
    pfam16423
    Location:384 → 427
    COE1_HLH; Transcription factor COE1 helix-loop-helix domain

  9. XM_012050851.1 → XP_011906241.1  transcription factor COE1 isoform X1

    See identical proteins and their annotated locations for XP_011906241.1

    Conserved Domains (3) summary
    cd11606
    Location:77 → 283
    COE_DBD; Colier/Olf/Early B-cell factor (EBF) DNA Binding Domain
    cd01175
    Location:299 → 383
    IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
    pfam16423
    Location:384 → 427
    COE1_HLH; Transcription factor COE1 helix-loop-helix domain

RNA

  1. XR_001013479.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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