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COL1A1 collagen type I alpha 1 chain [ Cercocebus atys (sooty mangabey) ]

Gene ID: 105579443, updated on 13-Mar-2024

Summary

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Gene symbol
COL1A1
Gene description
collagen type I alpha 1 chain
See related
Ensembl:ENSCATG00000026514
Gene type
protein coding
RefSeq status
MODEL
Organism
Cercocebus atys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Cercocebus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
51
Annotation release Status Assembly Chr Location
100 current Caty_1.0 (GCF_000955945.1) Unplaced Scaffold NW_012006043.1 (560909..578507)

NW_012006043.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 92 Neighboring gene small ubiquitin-related modifier 2 pseudogene Neighboring gene spermatid-specific linker histone H1-like protein Neighboring gene sarcoglycan alpha Neighboring gene protein phosphatase 1 regulatory subunit 9B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012006043.1 Unplaced Scaffold Reference Caty_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-1(I) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cercocebus atys Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caty_1.0

Genomic

  1. NW_012006043.1 Reference Caty_1.0

    Range
    560909..578507
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012046177.1 → XP_011901567.1  collagen alpha-1(I) chain isoform X1

    UniProtKB/TrEMBL
    A0A2K5L756
    Related
    ENSCATP00000008783.1, ENSCATT00000030835.1
    Conserved Domains (3) summary
    pfam01391
    Location:236 → 295
    Collagen; Collagen triple helix repeat (20 copies)
    pfam00093
    Location:40 → 95
    VWC; von Willebrand factor type C domain
    pfam01410
    Location:1230 → 1463
    COLFI; Fibrillar collagen C-terminal domain

  2. XM_012046178.1 → XP_011901568.1  collagen alpha-1(I) chain isoform X2

    Conserved Domains (3) summary
    pfam01391
    Location:236 → 295
    Collagen; Collagen triple helix repeat (20 copies)
    pfam00093
    Location:40 → 95
    VWC; von Willebrand factor type C domain
    pfam01410
    Location:1140 → 1373
    COLFI; Fibrillar collagen C-terminal domain
Nucleotide Protein
Heading Accession and Version

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