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PRDM1 PR/SET domain 1 [ Mandrillus leucophaeus (drill) ]

Gene ID: 105550985, updated on 13-Mar-2024

Summary

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Gene symbol
PRDM1
Gene description
PR/SET domain 1
See related
Ensembl:ENSMLEG00000034606
Gene type
protein coding
RefSeq status
MODEL
Organism
Mandrillus leucophaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Mandrillus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Mleu.le_1.0 (GCF_000951045.1) Unplaced Scaffold NW_012105377.1 (455612..479165, complement)

NW_012105377.1Genomic Context describing neighboring genes Neighboring gene crystallin beta-gamma domain containing 1 Neighboring gene autophagy related 5 Neighboring gene chromatin assembly factor 1 subunit B pseudogene Neighboring gene prolyl endopeptidase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012105377.1 Unplaced Scaffold Reference Mleu.le_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone deacetylase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PR domain zinc finger protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mandrillus leucophaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mleu.le_1.0

Genomic

  1. NW_012105377.1 Reference Mleu.le_1.0

    Range
    455612..479165 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011996078.1 → XP_011851468.1  PR domain zinc finger protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5YYY1
    Related
    ENSMLEP00000020774.1, ENSMLET00000044273.1
    Conserved Domains (5) summary
    smart00317
    Location:100 → 206
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:570 → 688
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:577 → 597
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:575 → 597
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:617 → 642
    zf-H2C2_2; Zinc-finger double domain

  2. XM_011996080.1 → XP_011851470.1  PR domain zinc finger protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A2K5YYY7
    Related
    ENSMLEP00000020779.1, ENSMLET00000044278.1
    Conserved Domains (5) summary
    smart00317
    Location:5 → 72
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:436 → 554
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:443 → 463
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:441 → 463
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:483 → 508
    zf-H2C2_2; Zinc-finger double domain

  3. XM_011996079.1 → XP_011851469.1  PR domain zinc finger protein 1 isoform X2

    Conserved Domains (5) summary
    smart00317
    Location:64 → 170
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:534 → 652
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:541 → 561
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:539 → 561
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:581 → 606
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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