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COL2A1 collagen type II alpha 1 chain [ Mandrillus leucophaeus (drill) ]

Gene ID: 105544943, updated on 13-Mar-2024

Summary

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Gene symbol
COL2A1
Gene description
collagen type II alpha 1 chain
See related
Ensembl:ENSMLEG00000040212
Gene type
protein coding
RefSeq status
MODEL
Organism
Mandrillus leucophaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Mandrillus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
54
Annotation release Status Assembly Chr Location
100 current Mleu.le_1.0 (GCF_000951045.1) Unplaced Scaffold NW_012103288.1 (1719010..1750679)

NW_012103288.1Genomic Context describing neighboring genes Neighboring gene phosphofructokinase, muscle Neighboring gene SUMO specific peptidase 1 Neighboring gene uncharacterized LOC105544942 Neighboring gene transmembrane protein 106C Neighboring gene vitamin D receptor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012103288.1 Unplaced Scaffold Reference Mleu.le_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of collagen type II trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-1(II) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mandrillus leucophaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mleu.le_1.0

Genomic

  1. NW_012103288.1 Reference Mleu.le_1.0

    Range
    1719010..1750679
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011987658.1 → XP_011843048.1  collagen alpha-1(II) chain isoform X1

    See identical proteins and their annotated locations for XP_011843048.1

    UniProtKB/TrEMBL
    A0A2K5ZW27
    Related
    ENSMLEP00000031992.1, ENSMLET00000055567.1
    Conserved Domains (4) summary
    PRK07764
    Location:852 → 1059
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam00093
    Location:34 → 89
    VWC; von Willebrand factor type C domain
    pfam01391
    Location:804 → 860
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01410
    Location:1251 → 1486
    COLFI; Fibrillar collagen C-terminal domain

  2. XM_011987659.1 → XP_011843049.1  collagen alpha-1(II) chain isoform X2

    See identical proteins and their annotated locations for XP_011843049.1

    UniProtKB/TrEMBL
    A0A2K5ZW22
    Related
    ENSMLEP00000031994.1, ENSMLET00000055569.1
    Conserved Domains (3) summary
    PRK07764
    Location:783 → 990
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam01391
    Location:735 → 791
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01410
    Location:1182 → 1417
    COLFI; Fibrillar collagen C-terminal domain
Nucleotide Protein
Heading Accession and Version

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