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SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 [ Mandrillus leucophaeus (drill) ]

Gene ID: 105540405, updated on 13-Mar-2024

Summary

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Gene symbol
SMARCC1
Gene description
SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1
See related
Ensembl:ENSMLEG00000002974
Gene type
protein coding
RefSeq status
MODEL
Organism
Mandrillus leucophaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Mandrillus
Orthologs
human mouse all
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Genomic context

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See SMARCC1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
100 current Mleu.le_1.0 (GCF_000951045.1) Unplaced Scaffold NW_012102254.1 (2690650..2917034)

NW_012102254.1Genomic Context describing neighboring genes Neighboring gene microtubule associated protein 4 Neighboring gene vacuolar protein sorting-associated protein 26A pseudogene Neighboring gene DExH-box helicase 30 Neighboring gene chondroitin sulfate proteoglycan 5 Neighboring gene elongator acetyltransferase complex subunit 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012102254.1 Unplaced Scaffold Reference Mleu.le_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosomal DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SWI/SNF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nBAF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of npBAF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SWI/SNF complex subunit SMARCC1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mandrillus leucophaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mleu.le_1.0

Genomic

  1. NW_012102254.1 Reference Mleu.le_1.0

    Range
    2690650..2917034
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011981027.1 → XP_011836417.1  SWI/SNF complex subunit SMARCC1

    See identical proteins and their annotated locations for XP_011836417.1

    UniProtKB/TrEMBL
    A0A2K5XC03
    Conserved Domains (5) summary
    COG5259
    Location:335 → 601
    RSC8; RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
    pfam04433
    Location:343 → 428
    SWIRM; SWIRM domain
    pfam16495
    Location:774 → 845
    SWIRM-assoc_1; SWIRM-associated region 1
    pfam16496
    Location:1 → 336
    SWIRM-assoc_2; SWIRM-associated domain at the N-terminal
    pfam16498
    Location:597 → 661
    SWIRM-assoc_3; SWIRM-associated domain at the C-terminal

  2. XM_011981028.1 → XP_011836418.1  SWI/SNF complex subunit SMARCC1

    See identical proteins and their annotated locations for XP_011836418.1

    UniProtKB/TrEMBL
    A0A2K5XC03
    Related
    ENSMLEP00000000834.1, ENSMLET00000003388.1
    Conserved Domains (5) summary
    COG5259
    Location:335 → 601
    RSC8; RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
    pfam04433
    Location:343 → 428
    SWIRM; SWIRM domain
    pfam16495
    Location:774 → 845
    SWIRM-assoc_1; SWIRM-associated region 1
    pfam16496
    Location:1 → 336
    SWIRM-assoc_2; SWIRM-associated domain at the N-terminal
    pfam16498
    Location:597 → 661
    SWIRM-assoc_3; SWIRM-associated domain at the C-terminal
Nucleotide Protein
Heading Accession and Version

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