U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

COPA COPI coat complex subunit alpha [ Colobus angolensis palliatus ]

Gene ID: 105522981, updated on 13-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
COPA
Gene description
COPI coat complex subunit alpha
See related
Ensembl:ENSCANG00000009748
Gene type
protein coding
RefSeq status
MODEL
Organism
Colobus angolensis palliatus (sub-species: palliatus)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Colobus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
32
Annotation release Status Assembly Chr Location
100 current Cang.pa_1.0 (GCF_000951035.1) Unplaced Scaffold NW_012117899.1 (1155241..1208853)

NW_012117899.1Genomic Context describing neighboring genes Neighboring gene VANGL planar cell polarity protein 2 Neighboring gene nescient helix-loop-helix 1 Neighboring gene nicastrin Neighboring gene peroxisomal biogenesis factor 19 Neighboring gene DDB1 and CUL4 associated factor 8

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_012117899.1 Unplaced Scaffold Reference Cang.pa_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of COPI vesicle coat IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
coatomer subunit alpha
Names
coatomer protein complex subunit alpha

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Colobus angolensis palliatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cang.pa_1.0

Genomic

  1. NW_012117899.1 Reference Cang.pa_1.0

    Range
    1155241..1208853
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011957665.1 → XP_011813055.1  coatomer subunit alpha

    UniProtKB/TrEMBL
    A0A2K5HGL7
    Related
    ENSCANP00000003470.1, ENSCANT00000013835.1
    Conserved Domains (5) summary
    COG2319
    Location:2 → 266
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:9 → 266
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam04053
    Location:305 → 709
    Coatomer_WDAD; Coatomer WD associated region
    pfam06957
    Location:758 → 1160
    COPI_C; Coatomer (COPI) alpha subunit C-terminus
    sd00039
    Location:15 → 49
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.