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SEMA3F semaphorin 3F [ Colobus angolensis palliatus ]

Gene ID: 105509684, updated on 13-Mar-2024

Summary

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Gene symbol
SEMA3F
Gene description
semaphorin 3F
See related
Ensembl:ENSCANG00000038678
Gene type
protein coding
RefSeq status
MODEL
Organism
Colobus angolensis palliatus (sub-species: palliatus)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Colobus
Orthologs
human mouse all
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Genomic context

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See SEMA3F in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current Cang.pa_1.0 (GCF_000951035.1) Unplaced Scaffold NW_012114932.1 (1808786..1843981, complement)

NW_012114932.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 38 member 3 Neighboring gene G protein subunit alpha transducin 1 Neighboring gene RNA binding motif protein 5 Neighboring gene RNA binding motif protein 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012114932.1 Unplaced Scaffold Reference Cang.pa_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
semaphorin-3F

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Colobus angolensis palliatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cang.pa_1.0

Genomic

  1. NW_012114932.1 Reference Cang.pa_1.0

    Range
    1808786..1843981 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011939049.1 → XP_011794439.1  semaphorin-3F isoform X1

    UniProtKB/TrEMBL
    A0A2K5JMM3, A0A2K5JMN8
    Related
    ENSCANP00000030098.1, ENSCANT00000053299.1
    Conserved Domains (4) summary
    cd05871
    Location:609 → 697
    Ig_Semaphorin_classIII; Immunoglobulin (Ig)-like domain of class III semaphorin
    cd11254
    Location:48 → 548
    Sema_3F; The Sema domain, a protein interacting module, of semaphorin 3F (Sema3F)
    smart00410
    Location:612 → 696
    IG_like; Immunoglobulin like
    smart00423
    Location:547 → 584
    PSI; domain found in Plexins, Semaphorins and Integrins

  2. XM_011939050.1 → XP_011794440.1  semaphorin-3F isoform X2

    UniProtKB/TrEMBL
    A0A2K5JMM7, A0A2K5JMN8
    Related
    ENSCANP00000030101.1, ENSCANT00000053303.1
    Conserved Domains (4) summary
    cd05871
    Location:578 → 666
    Ig_Semaphorin_classIII; Immunoglobulin (Ig)-like domain of class III semaphorin
    cd11254
    Location:48 → 517
    Sema_3F; The Sema domain, a protein interacting module, of semaphorin 3F (Sema3F)
    smart00410
    Location:581 → 665
    IG_like; Immunoglobulin like
    smart00423
    Location:516 → 553
    PSI; domain found in Plexins, Semaphorins and Integrins
Nucleotide Protein
Heading Accession and Version

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