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TCEA2 transcription elongation factor A2 [ Macaca nemestrina (pig-tailed macaque) ]

Gene ID: 105470463, updated on 13-Mar-2024

Summary

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Gene symbol
TCEA2
Gene description
transcription elongation factor A2
See related
Ensembl:ENSMNEG00000038511
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca nemestrina
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
101 current Mnem_1.0 (GCF_000956065.1) Unplaced Scaffold NW_012014244.1 (223696..252374, complement)

NW_012014244.1Genomic Context describing neighboring genes Neighboring gene LKAAEAR motif containing 1 Neighboring gene regulator of G protein signaling 19 Neighboring gene SRY-box transcription factor 18 Neighboring gene chromosome unknown C20orf204 homolog Neighboring gene pre-mRNA processing factor 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012014244 Unplaced Scaffold Reference Mnem_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription elongation factor A protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca nemestrina Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mnem_1.0

Genomic

  1. NW_012014244.1 Reference Mnem_1.0

    Range
    223696..252374 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011722468.2 → XP_011720770.1  transcription elongation factor A protein 2 isoform X1

    See identical proteins and their annotated locations for XP_011720770.1

    Conserved Domains (4) summary
    smart00510
    Location:136 → 237
    TFS2M; Domain in the central regions of transcription elongation factor S-II (and elsewhere)
    cd00183
    Location:5 → 81
    TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
    cd13749
    Location:252 → 297
    Zn-ribbon_TFIIS; domain III/zinc ribbon domain of Transcription Factor IIS
    TIGR01385
    Location:6 → 297
    TFSII; transcription elongation factor S-II

  2. XM_011722470.2 → XP_011720772.1  transcription elongation factor A protein 2 isoform X1

    See identical proteins and their annotated locations for XP_011720772.1

    Conserved Domains (4) summary
    smart00510
    Location:136 → 237
    TFS2M; Domain in the central regions of transcription elongation factor S-II (and elsewhere)
    cd00183
    Location:5 → 81
    TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
    cd13749
    Location:252 → 297
    Zn-ribbon_TFIIS; domain III/zinc ribbon domain of Transcription Factor IIS
    TIGR01385
    Location:6 → 297
    TFSII; transcription elongation factor S-II

  3. XM_011722471.1 → XP_011720773.1  transcription elongation factor A protein 2 isoform X1

    See identical proteins and their annotated locations for XP_011720773.1

    Conserved Domains (4) summary
    smart00510
    Location:136 → 237
    TFS2M; Domain in the central regions of transcription elongation factor S-II (and elsewhere)
    cd00183
    Location:5 → 81
    TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
    cd13749
    Location:252 → 297
    Zn-ribbon_TFIIS; domain III/zinc ribbon domain of Transcription Factor IIS
    TIGR01385
    Location:6 → 297
    TFSII; transcription elongation factor S-II

  4. XM_011722466.2 → XP_011720768.1  transcription elongation factor A protein 2 isoform X1

    See identical proteins and their annotated locations for XP_011720768.1

    Conserved Domains (4) summary
    smart00510
    Location:136 → 237
    TFS2M; Domain in the central regions of transcription elongation factor S-II (and elsewhere)
    cd00183
    Location:5 → 81
    TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
    cd13749
    Location:252 → 297
    Zn-ribbon_TFIIS; domain III/zinc ribbon domain of Transcription Factor IIS
    TIGR01385
    Location:6 → 297
    TFSII; transcription elongation factor S-II

  5. XM_011722464.2 → XP_011720766.1  transcription elongation factor A protein 2 isoform X1

    See identical proteins and their annotated locations for XP_011720766.1

    Conserved Domains (4) summary
    smart00510
    Location:136 → 237
    TFS2M; Domain in the central regions of transcription elongation factor S-II (and elsewhere)
    cd00183
    Location:5 → 81
    TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
    cd13749
    Location:252 → 297
    Zn-ribbon_TFIIS; domain III/zinc ribbon domain of Transcription Factor IIS
    TIGR01385
    Location:6 → 297
    TFSII; transcription elongation factor S-II

  6. XM_011722465.2 → XP_011720767.1  transcription elongation factor A protein 2 isoform X1

    See identical proteins and their annotated locations for XP_011720767.1

    Conserved Domains (4) summary
    smart00510
    Location:136 → 237
    TFS2M; Domain in the central regions of transcription elongation factor S-II (and elsewhere)
    cd00183
    Location:5 → 81
    TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
    cd13749
    Location:252 → 297
    Zn-ribbon_TFIIS; domain III/zinc ribbon domain of Transcription Factor IIS
    TIGR01385
    Location:6 → 297
    TFSII; transcription elongation factor S-II

  7. XM_011722472.2 → XP_011720774.1  transcription elongation factor A protein 2 isoform X2

    See identical proteins and their annotated locations for XP_011720774.1

    UniProtKB/TrEMBL
    A0A2K6D2I9
    Related
    ENSMNEP00000030123.1, ENSMNET00000054538.1
    Conserved Domains (4) summary
    smart00510
    Location:136 → 237
    TFS2M; Domain in the central regions of transcription elongation factor S-II (and elsewhere)
    cd00183
    Location:5 → 81
    TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
    cd13749
    Location:252 → 298
    Zn-ribbon_TFIIS; domain III/zinc ribbon domain of Transcription Factor IIS
    TIGR01385
    Location:6 → 299
    TFSII; transcription elongation factor S-II

  8. XM_011722469.2 → XP_011720771.1  transcription elongation factor A protein 2 isoform X1

    See identical proteins and their annotated locations for XP_011720771.1

    Conserved Domains (4) summary
    smart00510
    Location:136 → 237
    TFS2M; Domain in the central regions of transcription elongation factor S-II (and elsewhere)
    cd00183
    Location:5 → 81
    TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
    cd13749
    Location:252 → 297
    Zn-ribbon_TFIIS; domain III/zinc ribbon domain of Transcription Factor IIS
    TIGR01385
    Location:6 → 297
    TFSII; transcription elongation factor S-II
Nucleotide Protein
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