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VDR vitamin D receptor [ Macaca nemestrina (pig-tailed macaque) ]

Gene ID: 105470057, updated on 13-Mar-2024

Summary

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Gene symbol
VDR
Gene description
vitamin D receptor
See related
Ensembl:ENSMNEG00000029469
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca nemestrina
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Mnem_1.0 (GCF_000956065.1) Unplaced Scaffold NW_012014022.1 (16805406..16913761)

NW_012014022.1Genomic Context describing neighboring genes Neighboring gene collagen type II alpha 1 chain Neighboring gene uncharacterized LOC105470053 Neighboring gene transmembrane protein 106C Neighboring gene peroxisome proliferator-activated receptor gamma coactivator 1-beta-like Neighboring gene uncharacterized LOC105470056 Neighboring gene histone deacetylase 7 Neighboring gene solute carrier family 48 member 1 Neighboring gene uncharacterized LOC105470059 Neighboring gene Rap guanine nucleotide exchange factor 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012014022 Unplaced Scaffold Reference Mnem_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables vitamin D response element binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vitamin D3 receptor
Names
vitamin D (1,25- dihydroxyvitamin D3) receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca nemestrina Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mnem_1.0

Genomic

  1. NW_012014022.1 Reference Mnem_1.0

    Range
    16805406..16913761
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011721784.2 → XP_011720086.1  vitamin D3 receptor isoform X1

    See identical proteins and their annotated locations for XP_011720086.1

    UniProtKB/TrEMBL
    A0A2K6BFE5
    Conserved Domains (2) summary
    cd06933
    Location:131 → 433
    NR_LBD_VDR; The ligand binding domain of vitamin D receptors, a member of the nuclear receptor superfamily
    cd06955
    Location:23 → 129
    NR_DBD_VDR; DNA-binding domain of vitamin D receptors (VDR) is composed of two C4-type zinc fingers

  2. XM_011721787.2 → XP_011720089.1  vitamin D3 receptor isoform X2

    See identical proteins and their annotated locations for XP_011720089.1

    Conserved Domains (2) summary
    cd06933
    Location:124 → 426
    NR_LBD_VDR; The ligand binding domain of vitamin D receptors, a member of the nuclear receptor superfamily
    cd06955
    Location:16 → 122
    NR_DBD_VDR; DNA-binding domain of vitamin D receptors (VDR) is composed of two C4-type zinc fingers

  3. XM_011721782.1 → XP_011720084.1  vitamin D3 receptor isoform X1

    See identical proteins and their annotated locations for XP_011720084.1

    UniProtKB/TrEMBL
    A0A2K6BFE5
    Related
    ENSMNEP00000010102.1, ENSMNET00000034279.1
    Conserved Domains (2) summary
    cd06933
    Location:131 → 433
    NR_LBD_VDR; The ligand binding domain of vitamin D receptors, a member of the nuclear receptor superfamily
    cd06955
    Location:23 → 129
    NR_DBD_VDR; DNA-binding domain of vitamin D receptors (VDR) is composed of two C4-type zinc fingers

  4. XM_011721785.1 → XP_011720087.1  vitamin D3 receptor isoform X2

    See identical proteins and their annotated locations for XP_011720087.1

    Conserved Domains (2) summary
    cd06933
    Location:124 → 426
    NR_LBD_VDR; The ligand binding domain of vitamin D receptors, a member of the nuclear receptor superfamily
    cd06955
    Location:16 → 122
    NR_DBD_VDR; DNA-binding domain of vitamin D receptors (VDR) is composed of two C4-type zinc fingers

  5. XM_011721786.2 → XP_011720088.1  vitamin D3 receptor isoform X2

    See identical proteins and their annotated locations for XP_011720088.1

    Conserved Domains (2) summary
    cd06933
    Location:124 → 426
    NR_LBD_VDR; The ligand binding domain of vitamin D receptors, a member of the nuclear receptor superfamily
    cd06955
    Location:16 → 122
    NR_DBD_VDR; DNA-binding domain of vitamin D receptors (VDR) is composed of two C4-type zinc fingers

  6. XM_011721783.2 → XP_011720085.1  vitamin D3 receptor isoform X1

    See identical proteins and their annotated locations for XP_011720085.1

    UniProtKB/TrEMBL
    A0A2K6BFE5
    Conserved Domains (2) summary
    cd06933
    Location:131 → 433
    NR_LBD_VDR; The ligand binding domain of vitamin D receptors, a member of the nuclear receptor superfamily
    cd06955
    Location:23 → 129
    NR_DBD_VDR; DNA-binding domain of vitamin D receptors (VDR) is composed of two C4-type zinc fingers

  7. XM_011721788.2 → XP_011720090.1  vitamin D3 receptor isoform X3

    UniProtKB/TrEMBL
    A0A2K6BFC5
    Related
    ENSMNEP00000010108.1, ENSMNET00000034285.1
    Conserved Domains (2) summary
    cd06933
    Location:174 → 476
    NR_LBD_VDR; The ligand binding domain of vitamin D receptors, a member of the nuclear receptor superfamily
    cd06955
    Location:66 → 172
    NR_DBD_VDR; DNA-binding domain of vitamin D receptors (VDR) is composed of two C4-type zinc fingers
Nucleotide Protein
Heading Accession and Version

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