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ccdc180 coiled-coil domain containing 180 [ Takifugu rubripes (torafugu) ]

Gene ID: 105418990, updated on 13-Mar-2024

Summary

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Gene symbol
ccdc180
Gene description
coiled-coil domain containing 180
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 21
Exon count:
36
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 21 NC_042305.1 (6189665..6209303)
101 previous assembly FUGU5 (GCF_000180615.1) Unplaced Scaffold NW_004072803.1 (5813..11951)

Chromosome 21 - NC_042305.1Genomic Context describing neighboring genes Neighboring gene protein-O-mannosyltransferase 1 Neighboring gene small nuclear RNA activating complex, polypeptide 4 Neighboring gene uncharacterized LOC115247461 Neighboring gene endosome associated trafficking regulator 1 Neighboring gene checkpoint kinase 2 Neighboring gene glutathione S-transferase theta 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
coiled-coil domain-containing protein 180

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042305.1 Reference fTakRub1.2 Primary Assembly

    Range
    6189665..6209303
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029829356.1 → XP_029685216.1  coiled-coil domain-containing protein 180 isoform X2

  2. XM_029829355.1 → XP_029685215.1  coiled-coil domain-containing protein 180 isoform X1

  3. XM_029829359.1 → XP_029685219.1  coiled-coil domain-containing protein 180 isoform X5

  4. XM_029829361.1 → XP_029685221.1  coiled-coil domain-containing protein 180 isoform X7

    Conserved Domains (3) summary
    pfam14643
    Location:91 → 545
    DUF4455; Domain of unknown function (DUF4455)
    pfam14644
    Location:1068 → 1241
    DUF4456; Domain of unknown function (DUF4456)
    cl00470
    Location:909 → 1001
    AKR_SF; Aldo-keto reductase (AKR) superfamily

  5. XM_029829358.1 → XP_029685218.1  coiled-coil domain-containing protein 180 isoform X4

    Conserved Domains (3) summary
    pfam14643
    Location:91 → 507
    DUF4455; Domain of unknown function (DUF4455)
    pfam14644
    Location:1117 → 1290
    DUF4456; Domain of unknown function (DUF4456)
    cl00470
    Location:958 → 1050
    AKR_SF; Aldo-keto reductase (AKR) superfamily

  6. XM_029829360.1 → XP_029685220.1  coiled-coil domain-containing protein 180 isoform X6

  7. XM_029829357.1 → XP_029685217.1  coiled-coil domain-containing protein 180 isoform X3

    Conserved Domains (3) summary
    pfam14643
    Location:90 → 507
    DUF4455; Domain of unknown function (DUF4455)
    pfam14644
    Location:1117 → 1290
    DUF4456; Domain of unknown function (DUF4456)
    cl00470
    Location:958 → 1050
    AKR_SF; Aldo-keto reductase (AKR) superfamily

  8. XM_029829362.1 → XP_029685222.1  coiled-coil domain-containing protein 180 isoform X8

    Conserved Domains (2) summary
    pfam14643
    Location:91 → 508
    DUF4455; Domain of unknown function (DUF4455)
    cl00470
    Location:959 → 1051
    AKR_SF; Aldo-keto reductase (AKR) superfamily

  9. XM_029829363.1 → XP_029685223.1  coiled-coil domain-containing protein 180 isoform X9

RNA

  1. XR_003886572.1 RNA Sequence

  2. XR_003886573.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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