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LOC105379457 uncharacterized LOC105379457 [ Homo sapiens (human) ]

Gene ID: 105379457, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105379457
Gene description
uncharacterized LOC105379457
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward kidney (RPKM 1.7) See more
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Genomic context

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See LOC105379457 in Genome Data Viewer
Location:
4q32.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (159586262..159600156, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (162936732..162951109, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900924 Neighboring gene uncharacterized LOC124900926 Neighboring gene uncharacterized LOC107986324 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:160461571-160462096 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:160515695-160516602 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:160528774-160529416 Neighboring gene long intergenic non-protein coding RNA 2233 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:160619025-160619524 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:160635612-160636305 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:160636306-160636998 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:160669863-160670816 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:160871778-160872444 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:160897920-160898702 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:160947640-160948839 Neighboring gene uncharacterized LOC107986239

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    159586262..159600156 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001741913.1 RNA Sequence

  2. XR_007058485.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    162936732..162951109 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007074324.1 RNA Sequence

  2. XR_007074326.1 RNA Sequence

  3. XR_007074325.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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