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LOC105377407 uncharacterized LOC105377407 [ Homo sapiens (human) ]

Gene ID: 105377407, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105377407
Gene description
uncharacterized LOC105377407
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
4q28.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (124033437..124252180, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (127335898..127554739, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1091 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:124670185-124670770 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:124670771-124671354 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:124671355-124671938 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21882 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_72756 Neighboring gene ribosomal protein L21 pseudogene 50 Neighboring gene Sharpr-MPRA regulatory region 6240 Neighboring gene VISTA enhancer hs1525 Neighboring gene uncharacterized LOC124900776 Neighboring gene peptidylprolyl isomerase A pseudogene 76 Neighboring gene uncharacterized LOC105377406 Neighboring gene uncharacterized LOC105377408 Neighboring gene tubulin alpha pseudogene 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

General gene information

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Other Names

  • CTD-2325B11.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    124033437..124252180 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_939176.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    127335898..127554739 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007074962.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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