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LINC01696 long intergenic non-protein coding RNA 1696 [ Homo sapiens (human) ]

Gene ID: 105372897, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01696provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1696provided by HGNC
Primary source
HGNC:HGNC:52484
See related
Ensembl:ENSG00000227940 AllianceGenome:HGNC:52484
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.1) See more
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Genomic context

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Location:
1q32.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (209325456..209328532)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (208572263..208575338)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (209498801..209501877)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372896 Neighboring gene TFDP1 pseudogene 1 Neighboring gene ATP5MC2 pseudogene 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:209538955-209539455 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:209546699-209547200 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:209547201-209547700 Neighboring gene long intergenic non-protein coding RNA 1698 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:209556921-209557668 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:209557669-209558417 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:209570036-209570918 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:209572682-209573562 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:209576956-209578155 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:209601163-209602086 Neighboring gene MIR205 host gene Neighboring gene microRNA 205

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135085.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AW270068, BX119711
    Related
    ENST00000658311.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    209325456..209328532
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    208572263..208575338
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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