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SLITRK2 SLIT and NTRK like family member 2 [ Pteropus vampyrus (large flying fox) ]

Gene ID: 105309902, updated on 30-Mar-2024

Summary

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Gene symbol
SLITRK2
Gene description
SLIT and NTRK like family member 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus vampyrus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Pvam_2.0 (GCF_000151845.1) Unplaced Scaffold NW_011889715.1 (99789..107843)

NW_011889715.1Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene uncharacterized LOC111734273 Neighboring gene 5S ribosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011889715 Unplaced Scaffold Reference Pvam_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of presynapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in glutamatergic synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SLIT and NTRK-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus vampyrus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pvam_2.0

Genomic

  1. NW_011889715.1 Reference Pvam_2.0

    Range
    99789..107843
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023526467.1 → XP_023382235.1  SLIT and NTRK-like protein 2

    UniProtKB/TrEMBL
    A0A6P3RN76
    Conserved Domains (6) summary
    smart00082
    Location:529 → 579
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:496 → 520
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:67 → 87
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:405 → 459
    LRR_8; Leucine rich repeat
    cd21340
    Location:405 → 530
    PPP1R42; protein phosphatase 1 regulatory subunit 42
    cl15307
    Location:216 → 252
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

  2. XM_011386111.2 → XP_011384413.1  SLIT and NTRK-like protein 2

    See identical proteins and their annotated locations for XP_011384413.1

    UniProtKB/TrEMBL
    A0A6P3RN76
    Conserved Domains (6) summary
    smart00082
    Location:529 → 579
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:496 → 520
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:67 → 87
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:405 → 459
    LRR_8; Leucine rich repeat
    cd21340
    Location:405 → 530
    PPP1R42; protein phosphatase 1 regulatory subunit 42
    cl15307
    Location:216 → 252
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

  3. XM_023526466.1 → XP_023382234.1  SLIT and NTRK-like protein 2

    UniProtKB/TrEMBL
    A0A6P3RN76
    Conserved Domains (6) summary
    smart00082
    Location:529 → 579
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:496 → 520
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:67 → 87
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:405 → 459
    LRR_8; Leucine rich repeat
    cd21340
    Location:405 → 530
    PPP1R42; protein phosphatase 1 regulatory subunit 42
    cl15307
    Location:216 → 252
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

  4. XM_023526465.1 → XP_023382233.1  SLIT and NTRK-like protein 2

    UniProtKB/TrEMBL
    A0A6P3RN76
    Conserved Domains (6) summary
    smart00082
    Location:529 → 579
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:496 → 520
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:67 → 87
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:405 → 459
    LRR_8; Leucine rich repeat
    cd21340
    Location:405 → 530
    PPP1R42; protein phosphatase 1 regulatory subunit 42
    cl15307
    Location:216 → 252
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain
Nucleotide Protein
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