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COL5A1 collagen type V alpha 1 chain [ Pteropus vampyrus (large flying fox) ]

Gene ID: 105302945, updated on 30-Mar-2024

Summary

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Gene symbol
COL5A1
Gene description
collagen type V alpha 1 chain
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus vampyrus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
61
Annotation release Status Assembly Chr Location
101 current Pvam_2.0 (GCF_000151845.1) Unplaced Scaffold NW_011889070.1 (597393..697550)

NW_011889070.1Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene uncharacterized LOC111729921

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011889070 Unplaced Scaffold Reference Pvam_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-1(V) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus vampyrus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pvam_2.0

Genomic

  1. NW_011889070.1 Reference Pvam_2.0

    Range
    597393..697550
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023521056.1 → XP_023376824.1  collagen alpha-1(V) chain

    UniProtKB/TrEMBL
    A0A6P6BP25
    Conserved Domains (3) summary
    pfam01391
    Location:707 → 748
    Collagen; Collagen triple helix repeat (20 copies)
    smart00210
    Location:80 → 271
    TSPN; Thrombospondin N-terminal -like domains
    pfam01410
    Location:1673 → 1899
    COLFI; Fibrillar collagen C-terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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