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CACTIN cactin, spliceosome C complex subunit [ Pteropus vampyrus (large flying fox) ]

Gene ID: 105300479, updated on 30-Mar-2024

Summary

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Gene symbol
CACTIN
Gene description
cactin, spliceosome C complex subunit
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus vampyrus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Pvam_2.0 (GCF_000151845.1) Unplaced Scaffold NW_011888993.1 (1355936..1373093, complement)

NW_011888993.1Genomic Context describing neighboring genes Neighboring gene GIPC PDZ domain containing family member 3 Neighboring gene thromboxane A2 receptor Neighboring gene phosphatidylinositol-4-phosphate 5-kinase type 1 gamma Neighboring gene tight junction protein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011888993 Unplaced Scaffold Reference Pvam_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA cis splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cactin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus vampyrus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pvam_2.0

Genomic

  1. NW_011888993.1 Reference Pvam_2.0

    Range
    1355936..1373093 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011372710.2 → XP_011371012.1  cactin

    UniProtKB/TrEMBL
    A0A6P3R3Y3
    Conserved Domains (4) summary
    pfam09732
    Location:633 → 756
    CactinC_cactus; Cactus-binding C-terminus of cactin protein
    pfam10312
    Location:275 → 460
    Cactin_mid; Conserved mid region of cactin
    pfam14738
    Location:218 → 309
    PaaSYMP; Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1
    cl19731
    Location:451 → 522
    SipA; Salmonella invasion protein A
Nucleotide Protein
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