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EFEMP1 EGF containing fibulin extracellular matrix protein 1 [ Pteropus vampyrus (large flying fox) ]

Gene ID: 105294647, updated on 30-Mar-2024

Summary

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Gene symbol
EFEMP1
Gene description
EGF containing fibulin extracellular matrix protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus vampyrus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Pvam_2.0 (GCF_000151845.1) Unplaced Scaffold NW_011888872.1 (4380090..4435660)

NW_011888872.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 85A Neighboring gene uncharacterized LOC111742310 Neighboring gene ubiquitin-conjugating enzyme E2 N-like Neighboring gene 5S ribosomal RNA Neighboring gene polyribonucleotide nucleotidyltransferase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011888872 Unplaced Scaffold Reference Pvam_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
EGF-containing fibulin-like extracellular matrix protein 1
Names
EGF containing fibulin like extracellular matrix protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus vampyrus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pvam_2.0

Genomic

  1. NW_011888872.1 Reference Pvam_2.0

    Range
    4380090..4435660
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011363938.2 → XP_011362240.1  EGF-containing fibulin-like extracellular matrix protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011362240.1

    UniProtKB/TrEMBL
    A0A6P3QL78
    Conserved Domains (3) summary
    smart00179
    Location:222 → 252
    EGF_CA; Calcium-binding EGF-like domain
    pfam07645
    Location:181 → 214
    EGF_CA; Calcium-binding EGF domain
    pfam12662
    Location:282 → 305
    cEGF; Complement Clr-like EGF-like

  2. XM_011363939.2 → XP_011362241.1  EGF-containing fibulin-like extracellular matrix protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011362241.1

    UniProtKB/TrEMBL
    A0A6P3QL78
    Conserved Domains (3) summary
    smart00179
    Location:222 → 252
    EGF_CA; Calcium-binding EGF-like domain
    pfam07645
    Location:181 → 214
    EGF_CA; Calcium-binding EGF domain
    pfam12662
    Location:282 → 305
    cEGF; Complement Clr-like EGF-like

  3. XM_011363942.2 → XP_011362244.1  EGF-containing fibulin-like extracellular matrix protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011362244.1

    UniProtKB/TrEMBL
    A0A6P3QL78
    Conserved Domains (3) summary
    smart00179
    Location:222 → 252
    EGF_CA; Calcium-binding EGF-like domain
    pfam07645
    Location:181 → 214
    EGF_CA; Calcium-binding EGF domain
    pfam12662
    Location:282 → 305
    cEGF; Complement Clr-like EGF-like

  4. XM_023532857.1 → XP_023388625.1  EGF-containing fibulin-like extracellular matrix protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P3QL78
    Conserved Domains (3) summary
    smart00179
    Location:222 → 252
    EGF_CA; Calcium-binding EGF-like domain
    pfam07645
    Location:181 → 214
    EGF_CA; Calcium-binding EGF domain
    pfam12662
    Location:282 → 305
    cEGF; Complement Clr-like EGF-like

  5. XM_023532858.1 → XP_023388626.1  EGF-containing fibulin-like extracellular matrix protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A6P6CMC3
    Conserved Domains (3) summary
    smart00179
    Location:200 → 230
    EGF_CA; Calcium-binding EGF-like domain
    pfam07645
    Location:159 → 192
    EGF_CA; Calcium-binding EGF domain
    pfam12662
    Location:260 → 283
    cEGF; Complement Clr-like EGF-like
Nucleotide Protein
Heading Accession and Version

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