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LOC105214849 pre-mRNA-splicing factor syf1 homolog [ Zeugodacus cucurbitae (melon fly) ]

Gene ID: 105214849, updated on 10-Apr-2024

Summary

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Gene symbol
LOC105214849
Gene description
pre-mRNA-splicing factor syf1 homolog
See related
EnsemblRapid:LOC105214849
Gene type
protein coding
RefSeq status
MODEL
Organism
Zeugodacus cucurbitae
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Tephritoidea; Tephritidae; Zeugodacus; Zeugodacus
Also known as
Xab2
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Genomic context

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See LOC105214849 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_03 current idZeuCucr1.2 (GCF_028554725.1) 6 NC_071671.1 (19974835..19977960, complement)
101 previous assembly ASM80634v1 (GCF_000806345.1) Unplaced Scaffold NW_011863739.1 (445292..448415)

Chromosome 6 - NC_071671.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128922449 Neighboring gene uncharacterized LOC105214850 Neighboring gene Caskin-1 Neighboring gene uncharacterized LOC128922441 Neighboring gene SH3 domain-binding protein 5 homolog Neighboring gene SAM50-like protein CG7639

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Reconstructing a comprehensive transcriptome assembly of a white-pupal translocated strain of the pest fruit fly Bactrocera cucurbitae. Sim SB, et al. Gigascience, 2015. PMID 25830018, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in generation of catalytic spliceosome for first transesterification step IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Prp19 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of post-mRNA release spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor syf1 homolog
Names
XPA binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028554725.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference idZeuCucr1.2 Primary Assembly

Genomic

  1. NC_071671.1 Reference idZeuCucr1.2 Primary Assembly

    Range
    19974835..19977960 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011188516.3 → XP_011186818.1  pre-mRNA-splicing factor syf1 homolog

    See identical proteins and their annotated locations for XP_011186818.1

    UniProtKB/TrEMBL
    A0A0A1WZ47
    Related
    XP_011186818.1, XM_011188516.3
    Conserved Domains (3) summary
    sd00006
    Location:517 → 545
    TPR; TPR repeat [structural motif]
    pfam13429
    Location:147 → 199
    TPR_15; Tetratricopeptide repeat
    cl26002
    Location:522 → 617
    TPR_11; TPR repeat
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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