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ATF1 activating transcription factor 1 [ Camelus dromedarius (Arabian camel) ]

Gene ID: 105097180, updated on 18-Apr-2024

Summary

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Gene symbol
ATF1
Gene description
activating transcription factor 1
Locus tag
Cadr_000016853
Gene type
protein coding
RefSeq status
MODEL
Organism
Camelus dromedarius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Camelus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_04 current mCamDro1.pat (GCF_036321535.1) 11 NC_087446.1 (54396328..54453082)
101 previous assembly CamDro3 (GCF_000803125.2) 12 NC_044522.1 (11552495..11609560, complement)

Chromosome 11 - NC_087446.1Genomic Context describing neighboring genes Neighboring gene La ribonucleoprotein 4 Neighboring gene disco interacting protein 2 homolog B Neighboring gene transfer RNA alanine (anticodon UGC) Neighboring gene transmembrane serine protease 12 Neighboring gene thiol methyltransferase 1A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ATF4-CREB1 transcription factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclic AMP-dependent transcription factor ATF-1
Names
Cyclic AMP-dependent transcription factor ATF-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036321535.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCamDro1.pat

Genomic

  1. NC_087446.1 Reference mCamDro1.pat

    Range
    54396328..54453082
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031462580.2 → XP_031318440.1  cyclic AMP-dependent transcription factor ATF-1 isoform X2

    Conserved Domains (2) summary
    cd14690
    Location:214 → 268
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:48 → 82
    pKID; pKID domain

  2. XM_031462575.2 → XP_031318435.1  cyclic AMP-dependent transcription factor ATF-1 isoform X1

    UniProtKB/TrEMBL
    A0A5N4DHE5
    Conserved Domains (2) summary
    cd14690
    Location:254 → 308
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:88 → 122
    pKID; pKID domain

  3. XM_031462576.2 → XP_031318436.1  cyclic AMP-dependent transcription factor ATF-1 isoform X1

    UniProtKB/TrEMBL
    A0A5N4DHE5
    Conserved Domains (2) summary
    cd14690
    Location:254 → 308
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:88 → 122
    pKID; pKID domain

  4. XM_031462581.2 → XP_031318441.1  cyclic AMP-dependent transcription factor ATF-1 isoform X2

    Conserved Domains (2) summary
    cd14690
    Location:214 → 268
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:48 → 82
    pKID; pKID domain

  5. XM_031462579.2 → XP_031318439.1  cyclic AMP-dependent transcription factor ATF-1 isoform X1

    UniProtKB/TrEMBL
    A0A5N4DHE5
    Conserved Domains (2) summary
    cd14690
    Location:254 → 308
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:88 → 122
    pKID; pKID domain

  6. XM_031462578.2 → XP_031318438.1  cyclic AMP-dependent transcription factor ATF-1 isoform X1

    UniProtKB/TrEMBL
    A0A5N4DHE5
    Conserved Domains (2) summary
    cd14690
    Location:254 → 308
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:88 → 122
    pKID; pKID domain

  7. XM_031462582.2 → XP_031318442.1  cyclic AMP-dependent transcription factor ATF-1 isoform X2

    Conserved Domains (2) summary
    cd14690
    Location:214 → 268
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:48 → 82
    pKID; pKID domain
Nucleotide Protein
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