These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_020210.3 → NP_064595.2 semaphorin-4B precursor
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 are predicted to encode the same protein which is annotated as the largest open reading frame. Translation may intitiate at either of the first two AUG sites.
- Source sequence(s)
-
AC091167
- Consensus CDS
-
CCDS45347.1
- Related
- ENSP00000332204, OTTHUMP00000247637, ENST00000332496, OTTHUMT00000416809
- Conserved Domains (4) summary
-
- cd05872
Location:594 – 677
Blast Score: 306
- Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B
- smart00630
Location:70 – 499
Blast Score: 993
- Sema; semaphorin domain
- cd11257
Location:61 – 524
Blast Score: 2364
- Sema_4B; The Sema domain, a protein interacting module, of semaphorin 4B (Sema4B)
- cl02601
Location:525 – 548
Blast Score: 112
- PSI; Plexin repeat
-
NM_198925.2 → NP_945119.1 semaphorin-4B precursor
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) represents an alternate 5'UTR and transcription from an alternate promoter compared to variant 1. Variants 1 and 2 are predicted to encode the same protein which is annotated as the largest open reading frame. Translation may intitiate at either of the first two AUG sites.
- Source sequence(s)
-
AC091167
- Consensus CDS
-
CCDS45347.1
- Related
- ENSP00000394720, OTTHUMP00000247638, ENST00000411539, OTTHUMT00000416810
- Conserved Domains (4) summary
-
- cd05872
Location:594 – 677
Blast Score: 306
- Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B
- smart00630
Location:70 – 499
Blast Score: 993
- Sema; semaphorin domain
- cd11257
Location:61 – 524
Blast Score: 2364
- Sema_4B; The Sema domain, a protein interacting module, of semaphorin 4B (Sema4B)
- cl02601
Location:525 – 548
Blast Score: 112
- PSI; Plexin repeat
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000015.9 Reference GRCh37.p5 Primary Assembly
- Range
- 90728152..90772892
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000147.1 Alternate HuRef
- Range
- 66840233..66884886
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)