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megf6b multiple EGF-like-domains 6b [ Esox lucius (northern pike) ]

Gene ID: 105017257, updated on 13-Mar-2024

Summary

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Gene symbol
megf6b
Gene description
multiple EGF-like-domains 6b
See related
EnsemblRapid:ENSELUG00000011373
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Also known as
megf6
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 17
Exon count:
39
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 17 NC_047585.1 (24053002..24132752)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG17 NC_025984.4 (24504382..24586347, complement)

Chromosome 17 - NC_047585.1Genomic Context describing neighboring genes Neighboring gene MRT4 homolog, ribosome maturation factor Neighboring gene aldo-keto reductase family 7, member A3 (aflatoxin aldehyde reductase) Neighboring gene potassium voltage-gated channel subfamily A regulatory beta subunit 2a Neighboring gene parkinson protein 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei. Rondeau EB, et al. PLoS One, 2014. PMID 25069045, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables scavenger receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
multiple epidermal growth factor-like domains protein 6
Names
multiple EGF like domains 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047585.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    24053002..24132752
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010881689.4 → XP_010879991.3  multiple epidermal growth factor-like domains protein 6 isoform X1

    Related
    ENSELUP00000033122.3, ENSELUT00000001471.3
    Conserved Domains (3) summary
    pfam07546
    Location:48 → 117
    EMI; EMI domain
    pfam14670
    Location:463 → 498
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl00057
    Location:414 → 454
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  2. XM_020055494.3 → XP_019911053.2  multiple epidermal growth factor-like domains protein 6 isoform X2

    Related
    ENSELUP00000033089.3, ENSELUT00000001560.3
    Conserved Domains (2) summary
    pfam14670
    Location:322 → 357
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl00057
    Location:273 → 313
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
Nucleotide Protein
Heading Accession and Version

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