U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

sub1b SUB1 regulator of transcription b [ Esox lucius (northern pike) ]

Gene ID: 105014549, updated on 13-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
sub1b
Gene description
SUB1 regulator of transcription b
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Also known as
TCP4; sub1
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 13
Exon count:
5
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 13 NC_047581.1 (29993557..29998585)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG13 NC_025980.4 (9885115..9890143, complement)

Chromosome 13 - NC_047581.1Genomic Context describing neighboring genes Neighboring gene myotubularin related protein 12 Neighboring gene zinc finger RNA binding protein Neighboring gene uncharacterized LOC117595410 Neighboring gene natriuretic peptide receptor 3

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription initiation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
SUB1 regulator of transcription b
Names
Activated RNA polymerase II transcriptional coactivator p15
SUB1 homolog, transcriptional regulator

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001303686.1 → NP_001290615.1  SUB1 regulator of transcription b

    See identical proteins and their annotated locations for NP_001290615.1

    Status: PROVISIONAL

    Source sequence(s)
    BT079245
    UniProtKB/TrEMBL
    C1BXB6, C1BY51
    Conserved Domains (1) summary
    pfam02229
    Location:70 → 117
    PC4; Transcriptional Coactivator p15 (PC4)

RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047581.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    29993557..29998585
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.