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ydjc YdjC chitooligosaccharide deacetylase homolog [ Esox lucius (northern pike) ]

Gene ID: 105014536, updated on 13-Mar-2024

Summary

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Gene symbol
ydjc
Gene description
YdjC chitooligosaccharide deacetylase homolog
See related
EnsemblRapid:ENSELUG00000022342
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 13
Exon count:
8
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 13 NC_047581.1 (30357079..30368855)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG13 NC_025980.4 (9514328..9527103, complement)

Chromosome 13 - NC_047581.1Genomic Context describing neighboring genes Neighboring gene DNA topoisomerase III beta Neighboring gene uncharacterized LOC109616519 Neighboring gene uncharacterized LOC105014535 Neighboring gene stromal cell-derived factor 2-like 1 Neighboring gene ubiquitin-conjugating enzyme E2L 3b Neighboring gene chemokine (C-C motif) ligand 19a, tandem duplicate 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate deacetylase
Names
YdjC homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047581.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    30357079..30368855
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020052640.3 → XP_019908199.2  carbohydrate deacetylase isoform X1

    UniProtKB/TrEMBL
    A0A3P8Z3R8
    Related
    ENSELUP00000092453.1, ENSELUT00000105644.1
    Conserved Domains (1) summary
    cd10806
    Location:12 → 306
    YdjC_like_2; uncharacterized YdjC-like family proteins from eukaryotes

  2. XM_010876931.3 → XP_010875233.2  carbohydrate deacetylase isoform X2

    UniProtKB/TrEMBL
    A0A3P8Z3R8
    Related
    ENSELUP00000023466.2, ENSELUT00000034655.3
    Conserved Domains (1) summary
    cd10806
    Location:7 → 301
    YdjC_like_2; uncharacterized YdjC-like family proteins from eukaryotes

  3. XM_010876932.4 → XP_010875234.2  carbohydrate deacetylase isoform X2

    UniProtKB/TrEMBL
    A0A3P8Z3R8
    Conserved Domains (1) summary
    cd10806
    Location:7 → 301
    YdjC_like_2; uncharacterized YdjC-like family proteins from eukaryotes
Nucleotide Protein
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