U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

lyst lysosomal trafficking regulator [ Esox lucius (northern pike) ]

Gene ID: 105006092, updated on 13-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
lyst
Gene description
lysosomal trafficking regulator
See related
EnsemblRapid:ENSELUG00000018794
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
58
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 5 NC_047573.1 (887630..989048)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG05 NC_025972.4 (882082..983574)

Chromosome 5 - NC_047573.1Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 137Ba Neighboring gene nidogen 1a Neighboring gene guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-4 Neighboring gene beta-1,3-N-acetylgalactosaminyltransferase 2 Neighboring gene geranylgeranyl diphosphate synthase 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei. Rondeau EB, et al. PLoS One, 2014. PMID 25069045, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein localization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
lysosomal-trafficking regulator

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047573.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    887630..989048
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034292354.1 → XP_034148245.1  lysosomal-trafficking regulator

    UniProtKB/TrEMBL
    A0A6Q2XM71
    Related
    ENSELUP00000072714.2, ENSELUT00000062117.2
    Conserved Domains (5) summary
    smart01026
    Location:3274 → 3564
    Beach; Beige/BEACH domain
    PHA03169
    Location:2147 → 2349
    PHA03169; hypothetical protein; Provisional
    cd01201
    Location:3154 → 3259
    PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
    sd00039
    Location:3710 → 3756
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:3658 → 3920
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.